gene22998-v1.0-hybrid (Fragaria vesca)
TBP

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00352 (TBP) IPR000814 gene22998-v1.0-hybrid T343167_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No TFs with similar DNA binding domains

DNA Binding Domains

Protein ID Domain From To Sequence
mrna22998.1-v1.0-hybrid TBP 13 95
mrna22998.1-v1.0-hybrid TBP 103 186

Links

Other TBP family TFs
Other Fragaria vesca TFs

91 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Tbp Mus musculus ENSMUSG00000014767 D 0.714
Cagra.0001s0028 Capsella grandiflora Cagra.0001s0028 I 0.707
Carubv10010337m.g Capsella rubella Carubv10010337m.g I 0.707
Bostr.6758s0027 Boechera stricta Bostr.6758s0027 I 0.713
Bostr.3640s0136 Boechera stricta Bostr.3640s0136 I 0.707
Aquca_037_00296 Aquilegia coerulea Aquca_037_00296 I 0.707
mgf009543m Mimulus guttatus mgf009543m I 0.713
estExt_Genewise1.C_2460019 Physcomitrella patens estExt_Genewise1.C_2460019 I 0.701
Cucsa.142180 Cucumis sativus Cucsa.142180 I 0.713
cassava35685.valid.m1 Manihot esculenta cassava35685.valid.m1 I 0.705
cassava35684.valid.m1 Manihot esculenta cassava35684.valid.m1 I 0.719
cassava22625.valid.m1 Manihot esculenta cassava22625.valid.m1 I 0.719
29950.m001154 Ricinus communis 29950.m001154 I 0.719
TRIUR3_13880 Triticum urartu TRIUR3_13880 I 0.704
Traes_4DS_700213C0B Triticum aestivum Traes_4DS_700213C0B I 0.707
Traes_4BS_4F52653D8 Triticum aestivum Traes_4BS_4F52653D8 I 0.707
Solyc01g028930.2 Solanum lycopersicum Solyc01g028930.2 I 0.719
Si038805m.g Setaria italica Si038805m.g I 0.713
Si023295m.g Setaria italica Si023295m.g I 0.701
SELMODRAFT_270329 Selaginella moellendorffii SELMODRAFT_270329 I 0.701
SELMODRAFT_163230 Selaginella moellendorffii SELMODRAFT_163230 I 0.701
Sb08g022273 Sorghum bicolor Sb08g022273 I 0.707
AMTR_s00064p00125250 Amborella trichopoda AMTR_s00064p00125250 I 0.701
Lus10020260.g Linum usitatissimum Lus10020260.g I 0.713
PDK_20s1715251g002 Phoenix dactylifera PDK_20s1715251g002 I 0.713
LjT45I18.100.nd Lotus japonicus LjT45I18.100.nd I 0.707
PK25605.1 Cannabis sativa PK25605.1 I 0.713
PK11932.1 Cannabis sativa PK11932.1 I 0.712
Thhalv10021552m.g Eutrema salsugineum Thhalv10021552m.g I 0.707
Thhalv10011790m.g Eutrema salsugineum Thhalv10011790m.g I 0.707
SapurV1A.0680s0010 Salix purpurea SapurV1A.0680s0010 I 0.719
SapurV1A.0308s0180 Salix purpurea SapurV1A.0308s0180 I 0.713
Pavir.Ib04166 Panicum virgatum Pavir.Ib04166 I 0.717
MDP0000289755 Malus domestica MDP0000289755 I 0.713
Cagra.0690s0017 Capsella grandiflora Cagra.0690s0017 I 0.707
Lus10002634.g Linum usitatissimum Lus10002634.g I 0.713
Gorai.013G202900 Gossypium raimondii Gorai.013G202900 I 0.719
Gorai.007G288000 Gossypium raimondii Gorai.007G288000 I 0.719
Gorai.004G244700 Gossypium raimondii Gorai.004G244700 I 0.719
gene01591-v1.0-hybrid Fragaria vesca gene01591-v1.0-hybrid I 0.701
Eucgr.K01483 Eucalyptus grandis Eucgr.K01483 I 0.719
Eucgr.J01752 Eucalyptus grandis Eucgr.J01752 I 0.720
Ciclev10022324m.g Citrus clementina Ciclev10022324m.g I 0.713
Carubv10014676m.g Capsella rubella Carubv10014676m.g I 0.707
Sb01g012880 Sorghum bicolor Sb01g012880 I 0.713
F775_26235 Aegilops tauschii F775_26235 I 0.701
GSMUA_Achr5G08990_001 Musa acuminata GSMUA_Achr5G08990_001 I 0.713
PRUPE_ppa011711mg Prunus persica PRUPE_ppa011711mg I 0.707
GRMZM2G161418 Zea mays GRMZM2G161418 I 0.717
GRMZM2G149238 Zea mays GRMZM2G149238 I 0.713
GLYMA19G28780 Glycine max GLYMA19G28780 I 0.701
GLYMA16G25450 Glycine max GLYMA16G25450 I 0.701
GLYMA09G41330 Glycine max GLYMA09G41330 I 0.717
GLYMA03G04500 Glycine max GLYMA03G04500 I 0.701
TBP1 Arabidopsis lyrata fgenesh2_kg.3__1428__AT3G13445.1 I 0.707
TBP2 Arabidopsis lyrata fgenesh2_kg.1__4564__AT1G55520.2 I 0.713
GSMUA_Achr1G26830_001 Musa acuminata GSMUA_Achr1G26830_001 I 0.719
BRADI1G13220 Brachypodium distachyon BRADI1G13220 I 0.707
Bra030855 Brassica rapa Bra030855 I 0.707
Bra027434 Brassica rapa Bra027434 I 0.713
Bra011920 Brassica rapa Bra011920 I 0.713
Bo6g051360 Brassica oleracea Bo6g051360 I 0.713
Bo5g132530 Brassica oleracea Bo5g132530 I 0.713
Bo3g185290 Brassica oleracea Bo3g185290 I 0.707
BGIOSGA037671 Oryza indica BGIOSGA037671 I 0.707
TBP1 Arabidopsis thaliana AT3G13445 I 0.707
TBP2 Arabidopsis thaliana AT1G55520 I 0.713
OGLUM12G18540 Oryza glumaepatula OGLUM12G18540 I 0.701
PRUPE_ppa011675mg Prunus persica PRUPE_ppa011675mg I 0.731
POPTR_0013s05580 Populus trichocarpa POPTR_0013s05580 I 0.719
OS12G0580300 Oryza sativa OS12G0580300 I 0.701
TBP2 Oryza sativa OS03G0657000 I 0.701
ORGLA12G0202200 Oryza glaberrima ORGLA12G0202200 I 0.701
ORGLA03G0260300 Oryza glaberrima ORGLA03G0260300 I 0.701
OPUNC12G15370 Oryza punctata OPUNC12G15370 I 0.701
OPUNC03G25660 Oryza punctata OPUNC03G25660 I 0.701
ONIVA03G29180 Oryza nivara ONIVA03G29180 I 0.701
OMERI11G15350 Oryza meridionalis OMERI11G15350 I 0.701
OMERI03G24790 Oryza meridionalis OMERI03G24790 I 0.701
GSMUA_Achr6G23210_001 Musa acuminata GSMUA_Achr6G23210_001 I 0.713
OGLUM03G28780 Oryza glumaepatula OGLUM03G28780 I 0.701
OBART12G16890 Oryza barthii OBART12G16890 I 0.701
OBART03G28150 Oryza barthii OBART03G28150 I 0.701
OB03G33300 Oryza brachyantha OB03G33300 I 0.707
MTR_7g072580 Medicago truncatula MTR_7g072580 I 0.701
MTR_4g029010 Medicago truncatula MTR_4g029010 I 0.707
MLOC_44969 Hordeum vulgare MLOC_44969 I 0.707
LPERR12G14180 Leersia perrieri LPERR12G14180 I 0.707
gene04980-v1.0-hybrid Fragaria vesca gene04980-v1.0-hybrid N 0.940
gene04978-v1.0-hybrid Fragaria vesca gene04978-v1.0-hybrid N 0.928
gene04975-v1.0-hybrid Fragaria vesca gene04975-v1.0-hybrid N 0.940