BRADI1G06460 (Brachypodium distachyon)
TCP

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF03634 (TCP) IPR005333 BRADI1G06460 T343800_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
LjT20A21.20.nc
M02519_2.00 		Lotus japonicus
GGGACCAY
RTGGTCCC		 PBM
Weirauch et al.(2014)
pTH9202 		0.912 0.357
TCP4
M02501_2.00 		Arabidopsis thaliana
GGGACCAC
GTGGTCCC		 PBM
Weirauch et al.(2014)
pTH8084 		0.900 0.325
TCP4
M02514_2.00 		Arabidopsis lyrata
BKGGGACCAC
GTGGTCCCMV		 PBM
Weirauch et al.(2014)
pTH9313 		0.900 0.325
TCP2
M02503_2.00 		Arabidopsis thaliana
NBGGKMCCVN
NBGGKMCCVN		 PBM
Weirauch et al.(2014)
pTH8198 		0.892 0.338
TCP2
M02508_2.00 		Arabidopsis lyrata
GGSMCCAC
GTGGKSCC		 PBM
Weirauch et al.(2014)
pTH9231 		0.892 0.338
TCP3
M02500_2.00 		Arabidopsis thaliana
NDGGMCCACN
NGTGGKCCHN		 PBM
Weirauch et al.(2014)
pTH8835 		0.890 0.318
TCP3
M07274_2.00 		Arabidopsis thaliana
DHNGGGACCACH
DGTGGTCCCNDH		 Dap-seq
OMalley et al.(2016)
TCP3_colamp_a 		0.890 0.318
TCP3
M07275_2.00 		Arabidopsis thaliana
DNBGGGACCACHN
NDGTGGTCCCVNH		 Dap-seq
OMalley et al.(2016)
TCP3_col 		0.890 0.318
TCP5
M02510_2.00 		Arabidopsis lyrata
GGGACCAC
GTGGTCCC		 PBM
Weirauch et al.(2014)
pTH9233 		0.882 0.325
PK10344.1
M01313_2.00 		Cannabis sativa
GGGACCAC
GTGGTCCC		 PBM
Lambert et al.(2019)
pTH11464 		0.880 0.325
TCP5
M02505_2.00 		Arabidopsis thaliana
GGGACCAY
RTGGTCCC		 PBM
Weirauch et al.(2014)
pTH7523 		0.870 0.325
OS01G0213800
M11398_2.00 		Oryza sativa Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$PCF5_01 		0.868 0.306
TCP13
M07283_2.00 		Arabidopsis thaliana
GTGGGGACCACWD
HWGTGGTCCCCAC		 Dap-seq
OMalley et al.(2016)
PTF1_col_a 		0.856 0.318
TCP13
M07284_2.00 		Arabidopsis thaliana
NNBGGGACCACHN
NDGTGGTCCCVNN		 Dap-seq
OMalley et al.(2016)
PTF1_colamp_a 		0.856 0.318
TCP17
M07290_2.00 		Arabidopsis thaliana
GTGGGGACCAC
GTGGTCCCCAC		 Dap-seq
OMalley et al.(2016)
TCP17_col_a 		0.823 0.287
TCP17
M07291_2.00 		Arabidopsis thaliana
RTGGGGACCAC
GTGGTCCCCAY		 Dap-seq
OMalley et al.(2016)
TCP17_colamp_a 		0.823 0.287
For this family, TFs with SR scores > 0.822 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
BRADI1G06460.1 TCP 48 213

Links

Other TCP family TFs
Other Brachypodium distachyon TFs

433 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
cassava1723.valid.m1 Manihot esculenta cassava1723.valid.m1 N
Ciclev10028671m.g Citrus clementina Ciclev10028671m.g N
Ciclev10001533m.g Citrus clementina Ciclev10001533m.g N
Bostr.15774s0100 Boechera stricta Bostr.15774s0100 N
Aquca_007_00525 Aquilegia coerulea Aquca_007_00525 N
mgf001782m Mimulus guttatus mgf001782m N
Cucsa.160520 Cucumis sativus Cucsa.160520 N
cassava6877.valid.m1 Manihot esculenta cassava6877.valid.m1 N
cassava2865.m1 Manihot esculenta cassava2865.m1 N
Eucgr.F00433 Eucalyptus grandis Eucgr.F00433 N
29838.m001723 Ricinus communis 29838.m001723 N
29596.m000719 Ricinus communis 29596.m000719 N
Pm004389 Prunus mume Pm004389 N
Cla022485 Citrullus lanatus Cla022485 N
Ca_01470 Cicer arietinum Ca_01470 N
VIT_18s0001g07730 Vitis vinifera VIT_18s0001g07730 N
TRIUR3_23258 Triticum urartu TRIUR3_23258 N
TRIUR3_15386 Triticum urartu TRIUR3_15386 N
evm.TU.supercontig_21.35 Carica papaya evm.TU.supercontig_21.35 N
gene26538-v1.0-hybrid Fragaria vesca gene26538-v1.0-hybrid N
Gorai.002G138300 Gossypium raimondii Gorai.002G138300 N
Gorai.005G226000 Gossypium raimondii Gorai.005G226000 N
Gorai.010G033400 Gossypium raimondii Gorai.010G033400 N
MDP0000192617 Malus domestica MDP0000192617 N
orange1.1g017195m.g Citrus sinensis orange1.1g017195m.g N
orange1.1g017348m.g Citrus sinensis orange1.1g017348m.g N
Pavir.Ib04266 Panicum virgatum Pavir.Ib04266 N
Pavir.J38243 Panicum virgatum Pavir.J38243 N
SapurV1A.0004s0640 Salix purpurea SapurV1A.0004s0640 N
SapurV1A.0187s0160 Salix purpurea SapurV1A.0187s0160 N
SapurV1A.1216s0090 Salix purpurea SapurV1A.1216s0090 N
PK22222.1 Cannabis sativa PK22222.1 N
LjT45A20.140.nd Lotus japonicus LjT45A20.140.nd N
MLOC_6017 Hordeum vulgare MLOC_6017 N
ORUFI03G31080 Oryza rufipogon ORUFI03G31080 N
ORGLA01G0401200 Oryza glaberrima ORGLA01G0401200 N
OPUNC03G27170 Oryza punctata OPUNC03G27170 N
ONIVA03G31130 Oryza nivara ONIVA03G31130 N
OMERI03G26130 Oryza meridionalis OMERI03G26130 N
OLONG_006862 Oryza longistaminata OLONG_006862 N
OBART03G29860 Oryza barthii OBART03G29860 N
MTR_3g100040 Medicago truncatula MTR_3g100040 N
GATA18 Oryza sativa OS03G0684000 N
MLOC_57142 Hordeum vulgare MLOC_57142 N
LPERR03G24620 Leersia perrieri LPERR03G24620 N
GLYMA06G10290 Glycine max GLYMA06G10290 N
GLYMA04G10340 Glycine max GLYMA04G10340 N
F775_32334 Aegilops tauschii F775_32334 N
F775_05698 Aegilops tauschii F775_05698 N
BRADI1G12330 Brachypodium distachyon BRADI1G12330 N
GATA18 Oryza indica BGIOSGA010036 N
PGSC0003DMG400009353 Solanum tuberosum PGSC0003DMG400009353 N
PGSC0003DMG400010684 Solanum tuberosum PGSC0003DMG400010684 N
XM_002302327.1 Populus trichocarpa POPTR_0002s11140 N
POPTR_0005s19550 Populus trichocarpa POPTR_0005s19550 N
POPTR_0007s03120 Populus trichocarpa POPTR_0007s03120 N
POPTR_0017s06970 Populus trichocarpa POPTR_0017s06970 N
PRUPE_ppa008377mg Prunus persica PRUPE_ppa008377mg N
Sb01g011840 Sorghum bicolor Sb01g011840 N
Si036492m.g Setaria italica Si036492m.g N
Solyc01g106040.2 Solanum lycopersicum Solyc01g106040.2 N
TCM_007358 Theobroma cacao TCM_007358 N
TCM_034531 Theobroma cacao TCM_034531 N
Traes_4AL_B6992AAA6 Triticum aestivum Traes_4AL_B6992AAA6 N
Traes_4BS_ACD70539F Triticum aestivum Traes_4BS_ACD70539F N
Traes_4DS_AFCEDDE67 Triticum aestivum Traes_4DS_AFCEDDE67 N