CIS-BP Database: Catalog of Inferred Sequence Binding Preferences

TF Information

AtTCP14 *(Vitis vinifera)* TCP
Pfam ID	Interpro ID	Gene ID	CIS-BP ID	Sequence source	Animal TF db
PF03634 (TCP)	IPR005333	VIT_17s0000g06020	T344502_2.00	Ensembl (2018-Dec-8)	Link out
Directly determined binding motifs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
No direct experiments
Motifs from related TFs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
PK12736.1 M01315_2.00	Cannabis sativa	NRRSCMYAYNNNNN	NNNNNRTRKGSYYN	PBM Lambert et al.(2019) pTH10121	0.976	0.583
TCP14 M07289_2.00	Arabidopsis thaliana	AVADAKVDBGTGGGDCCCAC	GTGGGHCCCACVHBMTHTBT	Dap-seq OMalley et al.(2016) TCP14_col_b	0.974	0.556
TCP15 M00892_2.00	Arabidopsis thaliana	NNGGNCCCAC	GTGGGNCCNN	PBM Franco-Zorrilla et al.(2014) TCP15	0.973	0.550
TCP15 M07277_2.00	Arabidopsis thaliana	RTRGGDCCCACHH	DDGTGGGHCCYAY	Dap-seq OMalley et al.(2016) At1g69690_col_a	0.973	0.550
TCP15 M07278_2.00	Arabidopsis thaliana	RTRGGNCCCACHW	WDGTGGGNCCYAY	Dap-seq OMalley et al.(2016) At1g69690_colamp_a	0.973	0.550
TCP15 M11394_2.00	Arabidopsis thaliana	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$TCP15_01	0.973	0.550
TCP8 M01311_2.00	Arabidopsis thaliana	NGGNMCCAC	GTGGKNCCN	PBM Lambert et al.(2019) pTH11569	0.969	0.556
TCP22 M07279_2.00	Arabidopsis thaliana	RTRGGNCCCACHN	NDGTGGGNCCYAY	Dap-seq OMalley et al.(2016) At1g72010_colamp_a	0.963	0.470
TCP22 M07280_2.00	Arabidopsis thaliana	RTGGGDCCCACNN	NNGTGGGHCCCAY	Dap-seq OMalley et al.(2016) At1g72010_col	0.963	0.470
TCP23 M00891_2.00	Arabidopsis thaliana	NNGGKCCCAC	GTGGGMCCNN	PBM Franco-Zorrilla et al.(2014) TCP23	0.960	0.477
VIT_15s0048g01150 M02515_2.00	Vitis vinifera	NNGGNCCCAC	GTGGGNCCNN	PBM Weirauch et al.(2014) pTH9294	0.958	0.411
PK13314.1 M01316_2.00	Cannabis sativa	NNGGNCCCAC	GTGGGNCCNN	PBM Lambert et al.(2019) pTH11330	0.955	0.424
TCP9 M01086_2.00	Arabidopsis thaliana	NNGGGCCCACN	NGTGGGCCCNN	PBM Sullivan et al.(2014) pTH9796	0.954	0.411
TCP9 M07281_2.00	Arabidopsis thaliana	RTGGGDCCCAC	GTGGGHCCCAY	Dap-seq OMalley et al.(2016) At2g45680_colamp_a	0.954	0.411
TCP9 M07282_2.00	Arabidopsis thaliana	DGTGGGRCCCACDDNDNDNBN	NVNHNHNHHGTGGGYCCCACH	Dap-seq OMalley et al.(2016) At2g45680_col_b	0.954	0.411
LjSGA_053525.1 M02518_2.00	Lotus japonicus	GGNCCCAC	GTGGGNCC	PBM Weirauch et al.(2014) pTH9201	0.954	0.404
GLYMA19G26560 M02511_2.00	Glycine max	BGGBCCCAC	GTGGGVCCV	PBM Weirauch et al.(2014) pTH9184	0.953	0.437
TCP19 M02504_2.00	Arabidopsis thaliana	NNGGVCCCAC	GTGGGBCCNN	PBM Weirauch et al.(2014) pTH7452	0.952	0.391
cassava45561.m1 M02516_2.00	Manihot esculenta	KGGVCCCACH	DGTGGGBCCM	PBM Weirauch et al.(2014) pTH9207	0.952	0.411
TCP7 M07294_2.00	Arabidopsis thaliana	RTGGGNCCCAC	GTGGGNCCCAY	Dap-seq OMalley et al.(2016) TCP7_col_a	0.952	0.397
AT-TCP20 M02507_2.00	Arabidopsis lyrata	GRSCCCAC	GTGGGSYC	PBM Weirauch et al.(2014) pTH9229	0.951	0.397
PK14653.1 M01317_2.00	Cannabis sativa	BGGSCCCAC	GTGGGSCCV	PBM Lambert et al.(2019) pTH11324	0.951	0.391
PK14653.1 M02517_2.00	Cannabis sativa	BTGGGCCCAV	BTGGGCCCAV	PBM Weirauch et al.(2014) pTH9586	0.951	0.391
fgenesh2_kg.8__1074__AT5G51910.2 M02509_2.00	Arabidopsis lyrata	GRSCCCAC	GTGGGSYC	PBM Weirauch et al.(2014) pTH9232	0.951	0.404
PCF2 M11399_2.00	Oryza sativa	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$PCF2_01	0.950	0.391
TCP20 M02502_2.00	Arabidopsis thaliana	GGSCCCACNN	NNGTGGGSCC	PBM Weirauch et al.(2014) pTH8159	0.950	0.384
TCP20 M07285_2.00	Arabidopsis thaliana	NNNNNNNNNNGTGGGRCCCAC	GTGGGYCCCACNNNNNNNNNN	Dap-seq OMalley et al.(2016) TCP20_col_a	0.950	0.384
TCP20 M07286_2.00	Arabidopsis thaliana	RTGGGDCCCACH	DGTGGGHCCCAY	Dap-seq OMalley et al.(2016) TCP20_colamp_a	0.950	0.384
TCP20 M11397_2.00	Arabidopsis thaliana	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$TCP20_01	0.950	0.384
TCP21 M07292_2.00	Arabidopsis thaliana	NNRTGGGDCCCACN	NGTGGGHCCCAYNN	Dap-seq OMalley et al.(2016) At5g08330_col_a	0.949	0.391
TCP21 M07293_2.00	Arabidopsis thaliana	RTRGGDCCCACH	DGTGGGHCCYAY	Dap-seq OMalley et al.(2016) At5g08330_colamp_a	0.949	0.391
OsI_08196 M02513_2.00	Oryza sativa	GGGCCCAC	GTGGGCCC	PBM Weirauch et al.(2014) pTH9274	0.945	0.371
OS02G0635800 M02512_2.00	Oryza sativa	NBGGGCCCVN	NBGGGCCCVN	PBM Weirauch et al.(2014) pTH8856	0.945	0.364
TCP11 M11395_2.00	Arabidopsis thaliana	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$TCP11_01	0.894	0.391
TCP11 M11396_2.00	Arabidopsis thaliana	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$TCP11_02	0.894	0.391
For this family, TFs with SR scores > 0.822* will likely have a similar motif*

DNA Binding Domains

Protein ID	Domain	From	To	Sequence
VIT_17s0000g06020.t01	TCP	64	229	TSTKDRHTKVDGRGRRIRMPALCAARVFQLTRELGHKSDGETIEWLLQQAEPAVIAATGTGTIPANFTSLNISLRSSGSSMSVPSQLRSTYFNPNFSVPQRRSLFPGLSSENSSTLVNFQSNNLNSMFQAKQELRDTSLDLSETEESIGRKRRPEQDLSQQQMGSY

Links
Other TCP family TFs
Other *Vitis vinifera* TFs

658 Related TFs

Name	Species	Gene ID	Motif Evidence	SR Score	Action
pal-1	Caenorhabditis elegans	WBGene00003912	D
OFLC_0000632501	Onchocerca flexuosa	OFLC_0000632501	I
EEL_0000223001	Elaeophora elaphi	EEL_0000223001	I
EVEC_0000579401	Enterobius vermicularis	EVEC_0000579401	I
WUBG_02562	Wuchereria bancrofti	WUBG_02562	I
HPBE_0001563701	Heligmosomoides bakeri	HPBE_0001563701	I
HPLM_0000060301	Haemonchus placei	HPLM_0000060301	I
nAv.1.0.1.g01517	Acanthocheilonema viteae	nAv.1.0.1.g01517	I
NBR_0000825001	Nippostrongylus brasiliensis	NBR_0000825001	I
nDi.2.2.2.g06197	Dirofilaria immitis	nDi.2.2.2.g06197	I
nLs.2.1.2.g09719	Litomosoides sigmodontis	nLs.2.1.2.g09719	I
OESDEN_19696	Oesophagostomum dentatum	OESDEN_19696	I
HCOI01745700	Haemonchus contortus	HCOI01745700	I
PTRK_0001336600	Parastrongyloides trichosuri	PTRK_0001336600	I
RSKR_0001046900	Rhabditophanes kr3021	RSKR_0001046900	I
SMUV_0000190101	Syphacia muris	SMUV_0000190101	I
SMUV_0000918401	Syphacia muris	SMUV_0000918401	I
SPAL_0001492700	Strongyloides papillosus	SPAL_0001492700	I
SSTP_0000576200	Strongyloides stercoralis	SSTP_0000576200	I
SVE_0397300	Strongyloides venezuelensis	SVE_0397300	I
SVUK_0001504901	Strongylus vulgaris	SVUK_0001504901	I
TCLT_0000255601	Thelazia callipaeda	TCLT_0000255601	I
TCNE_0001280701	Toxocara canis	TCNE_0001280701	I
BTMF_0001276401	Brugia timori	BTMF_0001276401	I
Bm2663	Brugia malayi	Bm2663	I
CBG17980	Caenorhabditis briggsae	CBG17980	I
CBN10543	Caenorhabditis brenneri	CBN10543	I
CJA02391	Caenorhabditis japonica	CJA02391	I
CRE20227	Caenorhabditis remanei	CRE20227	I
EFV58119	Trichinella spiralis	EFV58119	I
ENSAPLG00000006821	Anas platyrhynchos	ENSAPLG00000006821	I
ENSMODG00000025439	Monodelphis domestica	ENSMODG00000025439	I
LOAG_15485	Loa loa	LOAG_15485	I
Ppa-pal-1	Pristionchus pacificus	PPA02358	I
WBGene00246390	Onchocerca volvulus	WBGene00246390	I
cdx1	Xenopus tropicalis	XB-GENE-485396	I
ALUE_0000232801	Ascaris lumbricoides	ALUE_0000232801	I
ANCCAN_03696	Ancylostoma caninum	ANCCAN_03696	I
ASIM_0001558001	Anisakis simplex	ASIM_0001558001	I
ASU_04180	Ascaris suum	ASU_04180	I
OESDEN_25610	Oesophagostomum dentatum	OESDEN_25610	N
PEQ_0000241601	Parascaris equorum	PEQ_0000241601	N
HelroG128744	Helobdella robusta	HelroG128744	N
scaffold1496-EXSNAP2012.4	Pristionchus exspectatus	scaffold1496-EXSNAP2012.4	N
scaffold580-EXSNAP2012.2	Pristionchus exspectatus	scaffold580-EXSNAP2012.2	N
ACAC_0001014401	Angiostrongylus cantonensis	ACAC_0001014401	N
ACOC_0000988901	Angiostrongylus costaricensis	ACOC_0000988901	N
maker-nMf.1.1.scaf03287-augustus-gene-0.5	Meloidogyne floridensis	maker-nMf.1.1.scaf03287-augustus-gene-0.5	N
TCNE_0000481301	Toxocara canis	TCNE_0000481301	N
DICVIV_02748	Dictyocaulus viviparus	DICVIV_02748	N

AtTCP14 (Vitis vinifera) TCP

TF Information

Directly determined binding motifs

Motifs from related TFs

DNA Binding Domains

Links

658 Related TFs

AtTCP14 **(Vitis vinifera)
TCP**