evm.TU.supercontig_14.188 (Carica papaya)
TCP

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF03634 (TCP) IPR005333 evm.TU.supercontig_14.188 T344813_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
PK10344.1
M01313_2.00 		Cannabis sativa
GGGACCAC
GTGGTCCC		 PBM
Lambert et al.(2019)
pTH11464 		0.960 0.437
TCP5
M02510_2.00 		Arabidopsis lyrata
GGGACCAC
GTGGTCCC		 PBM
Weirauch et al.(2014)
pTH9233 		0.936 0.392
TCP5
M02505_2.00 		Arabidopsis thaliana
GGGACCAY
RTGGTCCC		 PBM
Weirauch et al.(2014)
pTH7523 		0.934 0.386
TCP13
M07283_2.00 		Arabidopsis thaliana
GTGGGGACCACWD
HWGTGGTCCCCAC		 Dap-seq
OMalley et al.(2016)
PTF1_col_a 		0.908 0.373
TCP13
M07284_2.00 		Arabidopsis thaliana
NNBGGGACCACHN
NDGTGGTCCCVNN		 Dap-seq
OMalley et al.(2016)
PTF1_colamp_a 		0.908 0.373
TCP17
M07290_2.00 		Arabidopsis thaliana
GTGGGGACCAC
GTGGTCCCCAC		 Dap-seq
OMalley et al.(2016)
TCP17_col_a 		0.906 0.361
TCP17
M07291_2.00 		Arabidopsis thaliana
RTGGGGACCAC
GTGGTCCCCAY		 Dap-seq
OMalley et al.(2016)
TCP17_colamp_a 		0.906 0.361
LjT20A21.20.nc
M02519_2.00 		Lotus japonicus
GGGACCAY
RTGGTCCC		 PBM
Weirauch et al.(2014)
pTH9202 		0.887 0.367
TCP3
M02500_2.00 		Arabidopsis thaliana
NDGGMCCACN
NGTGGKCCHN		 PBM
Weirauch et al.(2014)
pTH8835 		0.877 0.323
TCP3
M07274_2.00 		Arabidopsis thaliana
DHNGGGACCACH
DGTGGTCCCNDH		 Dap-seq
OMalley et al.(2016)
TCP3_colamp_a 		0.877 0.323
TCP3
M07275_2.00 		Arabidopsis thaliana
DNBGGGACCACHN
NDGTGGTCCCVNH		 Dap-seq
OMalley et al.(2016)
TCP3_col 		0.877 0.323
OS01G0213800
M11398_2.00 		Oryza sativa Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$PCF5_01 		0.876 0.310
TCP4
M02501_2.00 		Arabidopsis thaliana
GGGACCAC
GTGGTCCC		 PBM
Weirauch et al.(2014)
pTH8084 		0.874 0.316
TCP4
M02514_2.00 		Arabidopsis lyrata
BKGGGACCAC
GTGGTCCCMV		 PBM
Weirauch et al.(2014)
pTH9313 		0.874 0.316
TCP2
M02503_2.00 		Arabidopsis thaliana
NBGGKMCCVN
NBGGKMCCVN		 PBM
Weirauch et al.(2014)
pTH8198 		0.851 0.335
TCP2
M02508_2.00 		Arabidopsis lyrata
GGSMCCAC
GTGGKSCC		 PBM
Weirauch et al.(2014)
pTH9231 		0.851 0.335
For this family, TFs with SR scores > 0.822 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
evm.model.supercontig_14.188 TCP 48 222

Links

Other TCP family TFs
Other Carica papaya TFs

417 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
nhr-70 Caenorhabditis elegans WBGene00003660 D
nhr-86 Caenorhabditis elegans WBGene00003676 D
L892_g8140 Steinernema scapterisci L892_g8140 I
nhr-28 Caenorhabditis elegans WBGene00003624 I
nhr-109 Caenorhabditis elegans WBGene00003699 I
nhr-273 Caenorhabditis elegans WBGene00020460 I
EVEC_0001266201 Enterobius vermicularis EVEC_0001266201 I
L596_g27786 Steinernema carpocapsae L596_g27786 I
L596_g9106 Steinernema carpocapsae L596_g9106 I
L889_g9698 Steinernema feltiae L889_g9698 I
L889_g987 Steinernema feltiae L889_g987 I
L892_g10708 Steinernema scapterisci L892_g10708 I
nhr-16 Caenorhabditis elegans WBGene00003615 I
L892_g8144 Steinernema scapterisci L892_g8144 I
L892_g8145 Steinernema scapterisci L892_g8145 I
L893_g4569 Steinernema glaseri L893_g4569 I
L893_g9517 Steinernema glaseri L893_g9517 I
L898_g10723 Steinernema monticolum L898_g10723 I
L898_g28806 Steinernema monticolum L898_g28806 I
scaffold1235-EXSNAP2012.2 Pristionchus exspectatus scaffold1235-EXSNAP2012.2 I
SMUV_0000801801 Syphacia muris SMUV_0000801801 I
SMUV_0000886001 Syphacia muris SMUV_0000886001 I
SMUV_0000909301 Syphacia muris SMUV_0000909301 I
CJA07390 Caenorhabditis japonica CJA07390 I
CBG03687 Caenorhabditis briggsae CBG03687 I
CBG03688 Caenorhabditis briggsae CBG03688 I
CBG12152 Caenorhabditis briggsae CBG12152 I
CBG16375 Caenorhabditis briggsae CBG16375 I
CBG20699 Caenorhabditis briggsae CBG20699 I
CBN03440 Caenorhabditis brenneri CBN03440 I
CBN03769 Caenorhabditis brenneri CBN03769 I
CBN04619 Caenorhabditis brenneri CBN04619 I
CBN16902 Caenorhabditis brenneri CBN16902 I
CBN24070 Caenorhabditis brenneri CBN24070 I
CJA04414 Caenorhabditis japonica CJA04414 I
CJA10576 Caenorhabditis japonica CJA10576 I
CRE07801 Caenorhabditis remanei CRE07801 I
CRE17310 Caenorhabditis remanei CRE17310 I
CRE17355 Caenorhabditis remanei CRE17355 I
CRE18529 Caenorhabditis remanei CRE18529 I
CRE27174 Caenorhabditis remanei CRE27174 I
CRE27659 Caenorhabditis remanei CRE27659 I
PPA29361 Pristionchus pacificus PPA29361 I
nhr-12 Caenorhabditis elegans WBGene00003611 I
CBG01395 Caenorhabditis briggsae CBG01395 N
CRE17311 Caenorhabditis remanei CRE17311 N