CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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nhr-109
(
Caenorhabditis elegans
)
Nuclear receptor
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00105 (zf-C4)
IPR001628
WBGene00003699
T306221_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
nhr-86
M02415_2.00
Caenorhabditis elegans
KTGTAGTC
GACTACAM
PBM
Weirauch et al.(2014)
pTH8598
0.968
0.757
nhr-70
M00695_2.00
Caenorhabditis elegans
NYTGTAGYYD
HRRCTACARN
PBM
Narasimhan et al.(2015)
pTH9174
0.859
0.657
For this family, TFs with SR scores >
0.745
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
T12C9.5a
Nuclear receptor
1
17
MCRACRLTKCIEVGMNP
T12C9.5b
Nuclear receptor
8
31
KLADIRCMCRACRLTKCIEVGMNP
T12C9.5c
Nuclear receptor
11
80
SKCSICQESGDGFHFGAEACRACAAFFRRSISENKLYTCSGNNDCDVTVNIRCMCRACRLTKCIEVGMNP
Links
Other
Nuclear receptor
family TFs
Other
Caenorhabditis elegans
TFs
57 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
CBG12152
Caenorhabditis briggsae
CBG12152
I
0.975
CRE18529
Caenorhabditis remanei
CRE18529
I
0.975
nhr-273
Caenorhabditis elegans
WBGene00020460
I
0.971
nhr-86
Caenorhabditis elegans
WBGene00003676
D
0.968
nhr-16
Caenorhabditis elegans
WBGene00003615
I
0.950
CBN24070
Caenorhabditis brenneri
CBN24070
I
0.950
CRE17354
Caenorhabditis remanei
CRE17354
I
0.949
nhr-28
Caenorhabditis elegans
WBGene00003624
I
0.946
CBN03769
Caenorhabditis brenneri
CBN03769
I
0.944
CBN04619
Caenorhabditis brenneri
CBN04619
I
0.944
CRE27659
Caenorhabditis remanei
CRE27659
I
0.941
CJA10576
Caenorhabditis japonica
CJA10576
I
0.939
CBG03687
Caenorhabditis briggsae
CBG03687
I
0.938
CBG16375
Caenorhabditis briggsae
CBG16375
I
0.938
CRE17310
Caenorhabditis remanei
CRE17310
I
0.931
CJA07390
Caenorhabditis japonica
CJA07390
I
0.931
CJA04414
Caenorhabditis japonica
CJA04414
I
0.931
SMUV_0000801801
Syphacia muris
SMUV_0000801801
I
0.923
CRE17355
Caenorhabditis remanei
CRE17355
I
0.917
SMUV_0000886001
Syphacia muris
SMUV_0000886001
I
0.915
CBN03440
Caenorhabditis brenneri
CBN03440
I
0.915
L892_g8140
Steinernema scapterisci
L892_g8140
I
0.913
L596_g27786
Steinernema carpocapsae
L596_g27786
I
0.898
L893_g4569
Steinernema glaseri
L893_g4569
I
0.892
L892_g8145
Steinernema scapterisci
L892_g8145
I
0.892
scaffold1235-EXSNAP2012.2
Pristionchus exspectatus
scaffold1235-EXSNAP2012.2
I
0.892
L898_g28806
Steinernema monticolum
L898_g28806
I
0.889
L892_g8144
Steinernema scapterisci
L892_g8144
I
0.888
L893_g9517
Steinernema glaseri
L893_g9517
I
0.886
nhr-12
Caenorhabditis elegans
WBGene00003611
I
0.879
CRE07801
Caenorhabditis remanei
CRE07801
I
0.878
CBN16902
Caenorhabditis brenneri
CBN16902
I
0.878
L898_g10723
Steinernema monticolum
L898_g10723
I
0.877
L889_g987
Steinernema feltiae
L889_g987
I
0.874
L889_g9698
Steinernema feltiae
L889_g9698
I
0.874
L893_g2090
Steinernema glaseri
L893_g2090
I
0.867
PPA29361
Pristionchus pacificus
PPA29361
I
0.865
CRE27174
Caenorhabditis remanei
CRE27174
I
0.861
EVEC_0001266201
Enterobius vermicularis
EVEC_0001266201
I
0.860
nhr-70
Caenorhabditis elegans
WBGene00003660
D
0.859
L892_g10708
Steinernema scapterisci
L892_g10708
I
0.843
L596_g9106
Steinernema carpocapsae
L596_g9106
I
0.842
CBG20699
Caenorhabditis briggsae
CBG20699
I
0.840
NECAME_01500
Necator americanus
NECAME_01500
I
0.837
scaffold183-EXSNAP2012.18
Pristionchus exspectatus
scaffold183-EXSNAP2012.18
I
0.835
PPA08785
Pristionchus pacificus
PPA08785
I
0.835
PPA10478
Pristionchus pacificus
PPA10478
I
0.834
scaffold260-EXSNAP2012.15
Pristionchus exspectatus
scaffold260-EXSNAP2012.15
I
0.834
CBG03688
Caenorhabditis briggsae
CBG03688
I
0.823
L898_g18539
Steinernema monticolum
L898_g18539
I
0.804
SMUV_0000909301
Syphacia muris
SMUV_0000909301
I
0.793
EVEC_0001095701
Enterobius vermicularis
EVEC_0001095701
I
0.782
L889_g10781
Steinernema feltiae
L889_g10781
I
0.776
CRE09011
Caenorhabditis remanei
CRE09011
I
0.760
L889_g17146
Steinernema feltiae
L889_g17146
I
0.760
nhr-53
Caenorhabditis elegans
WBGene00003643
I
0.757