nhr-53 (Caenorhabditis elegans)
Nuclear receptor

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00105 (zf-C4) IPR001628 WBGene00003643 T306167_2.00 Ensembl (2018-Dec-8) Link out
NCBI Gene Info:
Predicted to enable DNA-binding transcription factor activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to be active in nucleus. [provided by Alliance of Genome Resources, Apr 2022]

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
nhr-70
M00695_2.00 		Caenorhabditis elegans
NYTGTAGYYD
HRRCTACARN		 PBM
Narasimhan et al.(2015)
pTH9174 		0.772 0.629
For this family, TFs with SR scores > 0.745 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
K06B4.11 Nuclear receptor 21 90

Links

Other Nuclear receptor family TFs
Other Caenorhabditis elegans TFs

51 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
CBG04789 Caenorhabditis briggsae CBG04789 I 0.983
CRE09011 Caenorhabditis remanei CRE09011 I 0.983
CBN18264 Caenorhabditis brenneri CBN18264 I 0.981
L889_g10781 Steinernema feltiae L889_g10781 I 0.871
ASIM_0000109601 Anisakis simplex ASIM_0000109601 N 0.870
CJA10576 Caenorhabditis japonica CJA10576 I 0.853
TCNE_0001892601 Toxocara canis TCNE_0001892601 N 0.851
CBG16375 Caenorhabditis briggsae CBG16375 I 0.840
BXY_1598800 Bursaphelenchus xylophilus BXY_1598800 N 0.839
CBG17366 Caenorhabditis briggsae CBG17366 N 0.839
nhr-28 Caenorhabditis elegans WBGene00003624 I 0.836
GPLIN_000628500 Globodera pallida GPLIN_000628500 N 0.831
GPLIN_000805100 Globodera pallida GPLIN_000805100 N 0.831
nhr-205 Caenorhabditis elegans WBGene00011002 N 0.829
L898_g9580 Steinernema monticolum L898_g9580 I 0.829
CRE27175 Caenorhabditis remanei CRE27175 N 0.822
L893_g3450 Steinernema glaseri L893_g3450 N 0.819
BXY_0973100 Bursaphelenchus xylophilus BXY_0973100 I 0.816
L892_g8144 Steinernema scapterisci L892_g8144 I 0.815
L898_g28806 Steinernema monticolum L898_g28806 I 0.814
L596_g27786 Steinernema carpocapsae L596_g27786 I 0.814
scaffold28-EXSNAP2012.86 Pristionchus exspectatus scaffold28-EXSNAP2012.86 N 0.808
scaffold1235-EXSNAP2012.2 Pristionchus exspectatus scaffold1235-EXSNAP2012.2 I 0.805
CBN15963 Caenorhabditis brenneri CBN15963 N 0.802
ASU_03038 Ascaris suum ASU_03038 N 0.800
L892_g8146 Steinernema scapterisci L892_g8146 N 0.798
L893_g2090 Steinernema glaseri L893_g2090 I 0.797
L889_g16048 Steinernema feltiae L889_g16048 N 0.795
CBN16902 Caenorhabditis brenneri CBN16902 I 0.792
Minc14668 Meloidogyne incognita Minc14668 I 0.791
CBN03769 Caenorhabditis brenneri CBN03769 I 0.789
L893_g4569 Steinernema glaseri L893_g4569 I 0.788
L596_g24910 Steinernema carpocapsae L596_g24910 N 0.787
CRE27659 Caenorhabditis remanei CRE27659 I 0.787
nhr-12 Caenorhabditis elegans WBGene00003611 I 0.786
nhr-273 Caenorhabditis elegans WBGene00020460 I 0.785
L892_g8145 Steinernema scapterisci L892_g8145 I 0.785
MhA1_Contig1192.frz3.gene3 Meloidogyne hapla MhA1_Contig1192.frz3.gene3 I 0.784
augustus_masked-nMf.1.1.scaf21762-processed-gene-0.0 Meloidogyne floridensis augustus_masked-nMf.1.1.scaf21762-processed-gene-0.0 I 0.779
CBG20699 Caenorhabditis briggsae CBG20699 I 0.774
nhr-70 Caenorhabditis elegans WBGene00003660 D 0.772
CRE07801 Caenorhabditis remanei CRE07801 I 0.772
CBN04619 Caenorhabditis brenneri CBN04619 I 0.771
CRE18529 Caenorhabditis remanei CRE18529 I 0.771
CBG12152 Caenorhabditis briggsae CBG12152 I 0.768
PPA29361 Pristionchus pacificus PPA29361 I 0.768
CRE27174 Caenorhabditis remanei CRE27174 I 0.765
nhr-109 Caenorhabditis elegans WBGene00003699 I 0.757
SMUV_0000909301 Syphacia muris SMUV_0000909301 I 0.750
nhr-16 Caenorhabditis elegans WBGene00003615 I 0.750
EVEC_0001095701 Enterobius vermicularis EVEC_0001095701 I 0.746