L898_g9580 (Steinernema monticolum)
Nuclear receptor

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00105 (zf-C4) IPR001628 L898_g9580 T309538_2.00 WormBase:ParaSite (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
nhr-86
M02415_2.00 		Caenorhabditis elegans
KTGTAGTC
GACTACAM		 PBM
Weirauch et al.(2014)
pTH8598 		0.762 0.529
For this family, TFs with SR scores > 0.745 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
L898_g9580.t1 Nuclear receptor 50 119
L898_g9580.t2 Nuclear receptor 50 119
L898_g9580.t3 Nuclear receptor 41 110

Links

Other Nuclear receptor family TFs
Other Steinernema monticolum TFs

47 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
L889_g16048 Steinernema feltiae L889_g16048 N 0.986
L596_g24910 Steinernema carpocapsae L596_g24910 N 0.984
L893_g3450 Steinernema glaseri L893_g3450 N 0.984
L892_g8146 Steinernema scapterisci L892_g8146 N 0.983
BXY_0973100 Bursaphelenchus xylophilus BXY_0973100 I 0.967
GPLIN_000628500 Globodera pallida GPLIN_000628500 N 0.957
GPLIN_000805100 Globodera pallida GPLIN_000805100 N 0.957
TCNE_0001892601 Toxocara canis TCNE_0001892601 N 0.953
ASU_03038 Ascaris suum ASU_03038 N 0.950
scaffold28-EXSNAP2012.86 Pristionchus exspectatus scaffold28-EXSNAP2012.86 N 0.947
ASIM_0000109601 Anisakis simplex ASIM_0000109601 N 0.913
ACAC_0000388601 Angiostrongylus cantonensis ACAC_0000388601 N 0.909
L596_g9106 Steinernema carpocapsae L596_g9106 I 0.896
nhr-33 Caenorhabditis elegans WBGene00013976 N 0.889
L892_g10708 Steinernema scapterisci L892_g10708 I 0.884
CBN03149 Caenorhabditis brenneri CBN03149 N 0.883
CBG17366 Caenorhabditis briggsae CBG17366 N 0.872
PPA29361 Pristionchus pacificus PPA29361 I 0.861
EVEC_0001095701 Enterobius vermicularis EVEC_0001095701 I 0.856
SMUV_0000909301 Syphacia muris SMUV_0000909301 I 0.856
L889_g17146 Steinernema feltiae L889_g17146 I 0.840
L898_g18539 Steinernema monticolum L898_g18539 I 0.832
BXY_1598800 Bursaphelenchus xylophilus BXY_1598800 N 0.831
scaffold1235-EXSNAP2012.2 Pristionchus exspectatus scaffold1235-EXSNAP2012.2 I 0.830
nhr-53 Caenorhabditis elegans WBGene00003643 I 0.829
CBG04789 Caenorhabditis briggsae CBG04789 I 0.826
CBN18264 Caenorhabditis brenneri CBN18264 I 0.816
CBN03769 Caenorhabditis brenneri CBN03769 I 0.814
GPLIN_000989800 Globodera pallida GPLIN_000989800 N 0.814
L893_g2090 Steinernema glaseri L893_g2090 I 0.800
CRE09011 Caenorhabditis remanei CRE09011 I 0.796
CRE27175 Caenorhabditis remanei CRE27175 N 0.781
PPA10478 Pristionchus pacificus PPA10478 I 0.776
scaffold260-EXSNAP2012.15 Pristionchus exspectatus scaffold260-EXSNAP2012.15 I 0.776
CBN04619 Caenorhabditis brenneri CBN04619 I 0.773
PPA08785 Pristionchus pacificus PPA08785 I 0.771
scaffold183-EXSNAP2012.18 Pristionchus exspectatus scaffold183-EXSNAP2012.18 I 0.771
L892_g8144 Steinernema scapterisci L892_g8144 I 0.769
nhr-86 Caenorhabditis elegans WBGene00003676 D 0.762
CRE18529 Caenorhabditis remanei CRE18529 I 0.755
CBG12152 Caenorhabditis briggsae CBG12152 I 0.751
nhr-205 Caenorhabditis elegans WBGene00011002 N 0.750
L898_g28806 Steinernema monticolum L898_g28806 I 0.749
SMUV_0000721901 Syphacia muris SMUV_0000721901 I 0.748
L596_g27786 Steinernema carpocapsae L596_g27786 I 0.747
L889_g10781 Steinernema feltiae L889_g10781 I 0.746