30076.m004652 (Ricinus communis)
TCR/CxC

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF03638 (TCR) IPR005172 30076.m004652 T345938_2.00 JGI (2012-Mar-17)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
BGIBMGA008956
M02524_2.00 		Bombyx mori
AATTTAAAW
WTTTAAATT		 PBM
Weirauch et al.(2014)
pTH9238 		0.672 0.200
GE12548
M02529_2.00 		Drosophila yakuba
DTTYAAAY
RTTTRAAH		 PBM
Weirauch et al.(2014)
pTH9262 		0.672 0.200
NEMVEDRAFT_v1g111410
M01320_2.00 		Nematostella vectensis
NNNNYRWRN
NYWYRNNNN		 PBM
Lambert et al.(2019)
pTH9771 		0.672 0.200
SPU_025306
M02531_2.00 		Strongylocentrotus purpuratus
NNNNWYRAAH
DTTYRWNNNN		 PBM
Weirauch et al.(2014)
pTH9286 		0.672 0.200
XP_002124866.1
M01321_2.00 		Ciona intestinalis
NDTTYRAAN
NTTYRAAHN		 PBM
Lambert et al.(2019)
pTH9835 		0.672 0.200
fgenesh1_pg.C_Chr_09.0001000301
M02533_2.00 		Ostreococcus tauri
NNNNNRHNN
NNDYNNNNN		 PBM
Weirauch et al.(2014)
pTH9457 		0.672 0.200
fgeneshCV_pg.C_scaffold_18000164
M02534_2.00 		Chlorella vulgaris
NNNNDYRAAH
DTTYRHNNNN		 PBM
Weirauch et al.(2014)
pTH9252 		0.672 0.200
TCX4
M02521_2.00 		Arabidopsis thaliana
DWTTYRAAWH
DWTTYRAAWH		 PBM
Weirauch et al.(2014)
pTH7573 		0.672 0.197
TCX3
M01087_2.00 		Arabidopsis thaliana
NNDTTYAAAH
DTTTRAAHNN		 PBM
Sullivan et al.(2014)
pTH7218 		0.672 0.197
TCX3
M02522_2.00 		Arabidopsis thaliana
WTTYAAAH
DTTTRAAW		 PBM
Weirauch et al.(2014)
pTH7421 		0.672 0.197
TCX3
M07297_2.00 		Arabidopsis thaliana
DWTTYRAAWTTBAAW
WTTVAAATTYRAAWH		 Dap-seq
OMalley et al.(2016)
SOL1_colamp_a 		0.672 0.197
TCX3
M07298_2.00 		Arabidopsis thaliana
WTWWAAAATTYAAAW
WTTTRAATTTTWWAW		 Dap-seq
OMalley et al.(2016)
SOL1_col 		0.672 0.197
gw1.20.00.89.1
M02535_2.00 		Ostreococcus tauri
WNYWBVWRNW
WNYWBVWRNW		 PBM
Weirauch et al.(2014)
pTH9647 		0.672 0.197
ENSTSYG00000005291
M02528_2.00 		Tarsius syrichta
NNWDHDHWNN
NNWDHDHWNN		 PBM
Weirauch et al.(2014)
pTH9366 		0.672 0.189
PK27683.1
M01322_2.00 		Cannabis sativa
NDTTYAAAH
DTTTRAAHN		 PBM
Lambert et al.(2019)
pTH11347 		0.672 0.189
AT2G20110
M02520_2.00 		Arabidopsis thaliana
DTTTAAAH
DTTTAAAH		 PBM
Weirauch et al.(2014)
pTH7914 		0.672 0.187
TCX5
M02523_2.00 		Arabidopsis thaliana
NRTTCAAAYN
NRTTTGAAYN		 PBM
Weirauch et al.(2014)
pTH8164 		0.672 0.187
lin54
M02526_2.00 		Danio rerio
NHTYRAAH
DTTYRADN		 PBM
Weirauch et al.(2014)
pTH8399 		0.672 0.187
LIN54
M02527_2.00 		Gallus gallus
NRTTYAAAH
DTTTRAAYN		 PBM
Weirauch et al.(2014)
pTH8566 		0.672 0.187
AT2G20110
M07295_2.00 		Arabidopsis thaliana
WWHWAADATTYAAAW
WTTTRAATHTTWDWW		 Dap-seq
OMalley et al.(2016)
AT2G20110_col_a 		0.672 0.187
AT2G20110
M07296_2.00 		Arabidopsis thaliana
WWHNAAATTYAAAHN
NDTTTRAATTTNDWW		 Dap-seq
OMalley et al.(2016)
AT2G20110_colamp_a 		0.672 0.187
TSO1
M07299_2.00 		Arabidopsis thaliana
WWWTWDAAATTYAAA
TTTRAATTTHWAWWW		 Dap-seq
OMalley et al.(2016)
TSO1_col_a 		0.672 0.187
BRADI1G55710
M02525_2.00 		Brachypodium distachyon
NVTBYRVABN
NVTBYRVABN		 PBM
Weirauch et al.(2014)
pTH9241 		0.672 0.184
PK22848.1
M02532_2.00 		Cannabis sativa
NNNYNAAATTTNN
NNAAATTTNRNNN		 PBM
Weirauch et al.(2014)
pTH9724 		0.672 0.184
TCX2
M07300_2.00 		Arabidopsis thaliana
WWTYVAAATTYRAAW
WTTYRAATTTBRAWW		 Dap-seq
OMalley et al.(2016)
TCX2_col_a 		0.672 0.184
TCX2
M07301_2.00 		Arabidopsis thaliana
TTYVAAATTYRAAW
WTTYRAATTTBRAA		 Dap-seq
OMalley et al.(2016)
TCX2_colamp_a 		0.672 0.184
AT5G25790
M01319_2.00 		Arabidopsis thaliana
NHYRAAHN
NDTTYRDN		 PBM
Lambert et al.(2019)
pTH11533 		0.672 0.173
GSPATT00010696001
M02530_2.00 		Paramecium tetraurelia
NNBRAAHN
NDTTYVNN		 PBM
Weirauch et al.(2014)
pTH8720 		0.672 0.173
For this family, TFs with SR scores > 0.660 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
30076.m004652 TCR/CxC 672 709

Links

Other TCR/CxC family TFs
Other Ricinus communis TFs

1213 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
cassava1723.valid.m1 Manihot esculenta cassava1723.valid.m1 N
Ciclev10028671m.g Citrus clementina Ciclev10028671m.g N
Ciclev10001533m.g Citrus clementina Ciclev10001533m.g N
Bostr.15774s0100 Boechera stricta Bostr.15774s0100 N
Aquca_007_00525 Aquilegia coerulea Aquca_007_00525 N
mgf001782m Mimulus guttatus mgf001782m N
Cucsa.160520 Cucumis sativus Cucsa.160520 N
cassava6877.valid.m1 Manihot esculenta cassava6877.valid.m1 N
cassava2865.m1 Manihot esculenta cassava2865.m1 N
Eucgr.F00433 Eucalyptus grandis Eucgr.F00433 N
29838.m001723 Ricinus communis 29838.m001723 N
29596.m000719 Ricinus communis 29596.m000719 N
Cla022485 Citrullus lanatus Cla022485 N
Ca_01470 Cicer arietinum Ca_01470 N
VIT_18s0001g07730 Vitis vinifera VIT_18s0001g07730 N
TRIUR3_23258 Triticum urartu TRIUR3_23258 N
TRIUR3_15386 Triticum urartu TRIUR3_15386 N
Traes_4DS_AFCEDDE67 Triticum aestivum Traes_4DS_AFCEDDE67 N
evm.TU.supercontig_21.35 Carica papaya evm.TU.supercontig_21.35 N
gene26538-v1.0-hybrid Fragaria vesca gene26538-v1.0-hybrid N
Gorai.002G138300 Gossypium raimondii Gorai.002G138300 N
Gorai.005G226000 Gossypium raimondii Gorai.005G226000 N
Gorai.010G033400 Gossypium raimondii Gorai.010G033400 N
MDP0000192617 Malus domestica MDP0000192617 N
orange1.1g017195m.g Citrus sinensis orange1.1g017195m.g N
orange1.1g017348m.g Citrus sinensis orange1.1g017348m.g N
Pavir.Ib04266 Panicum virgatum Pavir.Ib04266 N
Pavir.J38243 Panicum virgatum Pavir.J38243 N
SapurV1A.0004s0640 Salix purpurea SapurV1A.0004s0640 N
SapurV1A.0187s0160 Salix purpurea SapurV1A.0187s0160 N
SapurV1A.1216s0090 Salix purpurea SapurV1A.1216s0090 N
PK22222.1 Cannabis sativa PK22222.1 N
LjT45A20.140.nd Lotus japonicus LjT45A20.140.nd N
MLOC_6017 Hordeum vulgare MLOC_6017 N
ORGLA01G0401200 Oryza glaberrima ORGLA01G0401200 N
OPUNC03G27170 Oryza punctata OPUNC03G27170 N
ONIVA03G31130 Oryza nivara ONIVA03G31130 N
OMERI03G26130 Oryza meridionalis OMERI03G26130 N
OLONG_006862 Oryza longistaminata OLONG_006862 N
OGLUM03G30120 Oryza glumaepatula OGLUM03G30120 N
OBART03G29860 Oryza barthii OBART03G29860 N
MTR_3g100040 Medicago truncatula MTR_3g100040 N
ORUFI03G31080 Oryza rufipogon ORUFI03G31080 N
MLOC_57142 Hordeum vulgare MLOC_57142 N
LPERR03G24620 Leersia perrieri LPERR03G24620 N
GLYMA06G10290 Glycine max GLYMA06G10290 N
GLYMA04G10340 Glycine max GLYMA04G10340 N
F775_32334 Aegilops tauschii F775_32334 N
F775_05698 Aegilops tauschii F775_05698 N
BRADI1G12330 Brachypodium distachyon BRADI1G12330 N
GATA18 Oryza indica BGIOSGA010036 N
GATA18 Oryza sativa OS03G0684000 N
PGSC0003DMG400009353 Solanum tuberosum PGSC0003DMG400009353 N
PGSC0003DMG400010684 Solanum tuberosum PGSC0003DMG400010684 N
XM_002302327.1 Populus trichocarpa POPTR_0002s11140 N
POPTR_0005s19550 Populus trichocarpa POPTR_0005s19550 N
POPTR_0007s03120 Populus trichocarpa POPTR_0007s03120 N
POPTR_0017s06970 Populus trichocarpa POPTR_0017s06970 N
PRUPE_ppa008377mg Prunus persica PRUPE_ppa008377mg N
Sb01g011840 Sorghum bicolor Sb01g011840 N
Si036492m.g Setaria italica Si036492m.g N
Solyc01g106040.2 Solanum lycopersicum Solyc01g106040.2 N
TCM_007358 Theobroma cacao TCM_007358 N
TCM_034531 Theobroma cacao TCM_034531 N
Traes_4AL_B6992AAA6 Triticum aestivum Traes_4AL_B6992AAA6 N
Traes_4BS_ACD70539F Triticum aestivum Traes_4BS_ACD70539F N