Bra016897 (Brassica rapa)
WRC

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF08879 (WRC) IPR014977 Bra016897 T350752_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
AT2G42040
M01088_2.00 		Arabidopsis thaliana
NBTRCACYNN
NNRGTGYAVN		 PBM
Sullivan et al.(2014)
pTH7503 		0.930 0.930
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Bra016897.1-P WRC 156 198

Links

Other WRC family TFs
Other Brassica rapa TFs

90 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
AT2G42040 Arabidopsis thaliana AT2G42040 D 0.952
Cagra.13389s0020 Capsella grandiflora Cagra.13389s0020 I 0.976
Carubv10023878m.g Capsella rubella Carubv10023878m.g I 0.976
Bostr.25993s0574 Boechera stricta Bostr.25993s0574 I 0.952
Aquca_014_00855 Aquilegia coerulea Aquca_014_00855 I 0.767
mgf007626m Mimulus guttatus mgf007626m I 0.767
Cucsa.242590 Cucumis sativus Cucsa.242590 I 0.837
cassava36464.valid.m1 Manihot esculenta cassava36464.valid.m1 I 0.814
cassava36463.valid.m1 Manihot esculenta cassava36463.valid.m1 I 0.814
cassava31648.valid.m1 Manihot esculenta cassava31648.valid.m1 I 0.814
29613.m000379 Ricinus communis 29613.m000379 I 0.814
29613.m000377 Ricinus communis 29613.m000377 I 0.814
Pm025936 Prunus mume Pm025936 I 0.814
Ca_07320 Cicer arietinum Ca_07320 I 0.814
VIT_08s0007g06690 Vitis vinifera VIT_08s0007g06690 I 0.767
VIT_08s0007g06640 Vitis vinifera VIT_08s0007g06640 I 0.814
TCM_024932 Theobroma cacao TCM_024932 I 0.814
Solyc10g080530.1 Solanum lycopersicum Solyc10g080530.1 I 0.837
Sb10g006810 Sorghum bicolor Sb10g006810 I 0.786
PRUPE_ppa016277mg Prunus persica PRUPE_ppa016277mg I 0.814
POPTR_0016s05850 Populus trichocarpa POPTR_0016s05850 I 0.837
POPTR_0016s05840 Populus trichocarpa POPTR_0016s05840 I 0.837
POPTR_0006s20790 Populus trichocarpa POPTR_0006s20790 I 0.814
orange1.1g019760m.g Citrus sinensis orange1.1g019760m.g I 0.837
PDK_20s1436981g002 Phoenix dactylifera PDK_20s1436981g002 I 0.791
LjT35F01.80.nd Lotus japonicus LjT35F01.80.nd I 0.791
PK26699.1 Cannabis sativa PK26699.1 I 0.814
Thhalv10017052m.g Eutrema salsugineum Thhalv10017052m.g I 0.930
SapurV1A.3188s0010 Salix purpurea SapurV1A.3188s0010 I 0.791
SapurV1A.0854s0100 Salix purpurea SapurV1A.0854s0100 I 0.814
SapurV1A.0854s0090 Salix purpurea SapurV1A.0854s0090 I 0.837
SapurV1A.0251s0230 Salix purpurea SapurV1A.0251s0230 I 0.814
SapurV1A.0251s0220 Salix purpurea SapurV1A.0251s0220 I 0.791
Pavir.J25248 Panicum virgatum Pavir.J25248 I 0.786
Pavir.J23833 Panicum virgatum Pavir.J23833 I 0.786
POPTR_0006s20770 Populus trichocarpa POPTR_0006s20770 I 0.837
MDP0000154434 Malus domestica MDP0000154434 I 0.837
MDP0000121493 Malus domestica MDP0000121493 I 0.814
Lus10021062.g Linum usitatissimum Lus10021062.g I 0.738
Lus10004164.g Linum usitatissimum Lus10004164.g I 0.732
Gorai.012G100300 Gossypium raimondii Gorai.012G100300 I 0.814
Gorai.002G156300 Gossypium raimondii Gorai.002G156300 I 0.814
gene00456-v1.0-hybrid Fragaria vesca gene00456-v1.0-hybrid I 0.837
evm.TU.supercontig_85.54 Carica papaya evm.TU.supercontig_85.54 I 0.814
Eucgr.A02456 Eucalyptus grandis Eucgr.A02456 I 0.814
Ciclev10012160m.g Citrus clementina Ciclev10012160m.g I 0.837
GLYMA02G28962 Glycine max GLYMA02G28962 I 0.791
GSMUA_Achr9G15730_001 Musa acuminata GSMUA_Achr9G15730_001 I 0.814
GSMUA_Achr7G18600_001 Musa acuminata GSMUA_Achr7G18600_001 I 0.814
GSMUA_Achr3G20210_001 Musa acuminata GSMUA_Achr3G20210_001 I 0.814
GSMUA_Achr3G07730_001 Musa acuminata GSMUA_Achr3G07730_001 I 0.791
GSMUA_Achr10G29530_001 Musa acuminata GSMUA_Achr10G29530_001 I 0.814
GRMZM2G165991 Zea mays GRMZM2G165991 I 0.707
GRMZM2G033915 Zea mays GRMZM2G033915 I 0.744
GLYMA19G33070 Glycine max GLYMA19G33070 I 0.814
GLYMA09G16841 Glycine max GLYMA09G16841 I 0.814
GLYMA03G30170 Glycine max GLYMA03G30170 I 0.814
LPERR02G28190 Leersia perrieri LPERR02G28190 I 0.786
fgenesh2_kg.4__2350__AT2G42040.1 Arabidopsis lyrata fgenesh2_kg.4__2350__AT2G42040.1 I 0.952
F775_01928 Aegilops tauschii F775_01928 I 0.750
BRADI1G46270 Brachypodium distachyon BRADI1G46270 I 0.767
Bra004667 Brassica rapa Bra004667 I 0.907
Bra000251 Brassica rapa Bra000251 I 0.953
Bo4g191280 Brassica oleracea Bo4g191280 I 0.977
Bo4g014690 Brassica oleracea Bo4g014690 I 0.930
Bo3g035920 Brassica oleracea Bo3g035920 I 0.953
BGIOSGA022518 Oryza indica BGIOSGA022518 I 0.762
BGIOSGA005516 Oryza indica BGIOSGA005516 I 0.767
OMERI06G07980 Oryza meridionalis OMERI06G07980 I 0.756
OS06G0207600 Oryza sativa OS06G0207600 I 0.762
OS02G0773600 Oryza sativa OS02G0773600 I 0.767
ORUFI06G07050 Oryza rufipogon ORUFI06G07050 I 0.762
ORUFI02G35820 Oryza rufipogon ORUFI02G35820 I 0.767
ORGLA06G0063300 Oryza glaberrima ORGLA06G0063300 I 0.762
ORGLA02G0296600 Oryza glaberrima ORGLA02G0296600 I 0.767
OPUNC06G06450 Oryza punctata OPUNC06G06450 I 0.744
OPUNC02G31650 Oryza punctata OPUNC02G31650 I 0.767
ONIVA06G08110 Oryza nivara ONIVA06G08110 I 0.762
ONIVA02G36360 Oryza nivara ONIVA02G36360 I 0.767
PGSC0003DMG400023669 Solanum tuberosum PGSC0003DMG400023669 I 0.837
OMERI02G32570 Oryza meridionalis OMERI02G32570 I 0.767
OGLUM06G07170 Oryza glumaepatula OGLUM06G07170 I 0.762
OGLUM02G35430 Oryza glumaepatula OGLUM02G35430 I 0.767
OBART06G06800 Oryza barthii OBART06G06800 I 0.767
OB06G16230 Oryza brachyantha OB06G16230 I 0.744
MTR_7g093360 Medicago truncatula MTR_7g093360 I 0.814
MTR_7g093350 Medicago truncatula MTR_7g093350 I 0.814
MTR_1g054175 Medicago truncatula MTR_1g054175 I 0.814
MLOC_17575 Hordeum vulgare MLOC_17575 I 0.744
LPERR06G06210 Leersia perrieri LPERR06G06210 I 0.762