cassava20838.m1 (Manihot esculenta)
AP2

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00847 (AP2) IPR001471 cassava20838.m1 T006841_2.00 JGI (2012-Mar-17)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
abi4
M02648_2.00 		Zea mays
CGSYGCYBYB
VRVRGCRSCG		 SELEX
Mathelier et al.(2014)
MA0123.1 		0.783 0.900
abi4
M09706_2.00 		Zea mays Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$ABI4_01 		0.783 0.900
For this family, TFs with SR scores > 0.677 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
cassava20838.m1 AP2 58 109

Links

Other AP2 family TFs
Other Manihot esculenta TFs

57 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
BGIOSGA004768 Oryza indica BGIOSGA004768 I
BGIOSGA033525 Oryza indica BGIOSGA033525 N
Bo7g117320 Brassica oleracea Bo7g117320 I
Bostr.7867s1389 Boechera stricta Bostr.7867s1389 I
Bra017706 Brassica rapa Bra017706 I
BRADI2G23160 Brachypodium distachyon BRADI2G23160 I
BRADI2G54500 Brachypodium distachyon BRADI2G54500 I
Cagra.2350s0072 Capsella grandiflora Cagra.2350s0072 I
F775_14723 Aegilops tauschii F775_14723 I
GRMZM2G112799 Zea mays GRMZM2G112799 I
GRMZM2G376061 Zea mays GRMZM2G376061 I
GSMUA_Achr10G13530_001 Musa acuminata GSMUA_Achr10G13530_001 I
GSMUA_Achr6G34890_001 Musa acuminata GSMUA_Achr6G34890_001 I
gw1.254.15.1 Physcomitrella patens gw1.254.15.1 I
LjSGA_020980.2 Lotus japonicus LjSGA_020980.2 I
LPERR01G31500 Leersia perrieri LPERR01G31500 I
OB11G27850 Oryza brachyantha OB11G27850 N
OGLUM01G40530 Oryza glumaepatula OGLUM01G40530 I
OMERI01G33710 Oryza meridionalis OMERI01G33710 I
ONIVA01G41740 Oryza nivara ONIVA01G41740 I
OPUNC01G35440 Oryza punctata OPUNC01G35440 I
OPUNC01G35470 Oryza punctata OPUNC01G35470 I
ORGLA01G0304700 Oryza glaberrima ORGLA01G0304700 I
OS01G0839100 Oryza sativa OS01G0839100 I
OS11G0702300 Oryza sativa OS11G0702300 N
Pavir.Da01393 Panicum virgatum Pavir.Da01393 I
Pavir.Eb03660 Panicum virgatum Pavir.Eb03660 I
Pavir.Ha00193 Panicum virgatum Pavir.Ha00193 I
Pavir.Hb00023 Panicum virgatum Pavir.Hb00023 I
Pavir.J14338 Panicum virgatum Pavir.J14338 I
PGSC0003DMG401030312 Solanum tuberosum PGSC0003DMG401030312 I
Sb03g039270 Sorghum bicolor Sb03g039270 I
scaffold_700593.1 Arabidopsis lyrata scaffold_700593.1 I
Si003051m.g Setaria italica Si003051m.g I
Solyc06g075780.1 Solanum lycopersicum Solyc06g075780.1 I
TRAES3BF127400030CFD_g Triticum aestivum TRAES3BF127400030CFD_g I
Traes_4DS_276818E4F Triticum aestivum Traes_4DS_276818E4F I
ZAT3 Arabidopsis thaliana AT4G35280 I