CIS-BP Database: Catalog of Inferred Sequence Binding Preferences

TF Information

fgenesh1_pm.chr_4_#_35 *(Ostreococcus RCC809)* AP2
Pfam ID	Interpro ID	Gene ID	CIS-BP ID	Sequence source
PF00847 (AP2)	IPR001471	fgenesh1_pm.chr_4_#_35	T007240_2.00	JGI (2012-Mar-17)
Directly determined binding motifs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
No direct experiments
Motifs from related TFs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
RAP2-12 M01046_2.00	Arabidopsis thaliana	RSMGBMNNNN	NNNNKVCKSY	PBM Sullivan et al.(2014) pTH7359	0.782	0.837
RAP2-12 M06588_2.00	Arabidopsis thaliana	NHDCCGCCGCCRHHDHNNNHN	NDNNNDHDDYGGCGGCGGHDN	Dap-seq OMalley et al.(2016) RAP212_col_a	0.782	0.837
RAP2-2 M00719_2.00	Arabidopsis thaliana	NNRBYGNN	NNCRVYNN	PBM Chang et al.(2013) pTH7227	0.779	0.837
0100010458 M01644_2.00	Ostreococcus tauri	MGCCGSCR	YGSCGGCK	PBM Weirauch et al.(2014) pTH9447	0.753	0.837
Q7Y1W2_TOBAC M09735_2.00	Nicotiana tabacum	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$CEF1_01	0.751	0.776
O65242_TOBAC M09730_2.00	Nicotiana tabacum	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$TSI1_01	0.746	0.735
EREBP1 M09708_2.00	Oryza sativa	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$EREBP1_01	0.746	0.755
LOC_Os08g36920 M01634_2.00	Oryza sativa	NNNGSCGHNN	NNDCGSCNNN	PBM Weirauch et al.(2014) pTH8596	0.728	0.796
ERF2_TOBAC M09727_2.00	Nicotiana tabacum	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$ERF2_01	0.725	0.714
ERF4_TOBAC M09728_2.00	Nicotiana tabacum	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$ERF3_02	0.720	0.735
PK19363.1 M01100_2.00	Cannabis sativa	NMGCCGHMNN	NNKDCGGCKN	PBM Lambert et al.(2019) pTH10138	0.714	0.714
PK19363.1 M01643_2.00	Cannabis sativa	CGCCGYCD	HGRCGGCG	PBM Weirauch et al.(2014) pTH9609	0.714	0.714
AT2G33710 M01613_2.00	Arabidopsis thaliana	NSMGCCGHMN	NKDCGGCKSN	PBM Weirauch et al.(2014) pTH7543	0.714	0.755
AT2G33710 M06606_2.00	Arabidopsis thaliana	DBCGCCGCCGYHDHHDNH	DNHDDHDRCGGCGGCGVH	Dap-seq OMalley et al.(2016) At2g33710_colamp_a	0.714	0.755
AT2G33710 M06607_2.00	Arabidopsis thaliana	NHDYCKCCGCCGYMD	HKRCGGCGGMGRHDN	Dap-seq OMalley et al.(2016) At2g33710_col	0.714	0.755
ERF4 M01616_2.00	Arabidopsis thaliana	VCGCCGCC	GGCGGCGB	PBM Weirauch et al.(2014) pTH8156	0.714	0.735
ERF4 M06616_2.00	Arabidopsis thaliana	YCDCCGCCGCCRHHD	HDDYGGCGGCGGHGR	Dap-seq OMalley et al.(2016) ERF4_col_a	0.714	0.735
ERF4 M06617_2.00	Arabidopsis thaliana	NHNNHNSCGCCGYCRHHDNN	NNHDDYGRCGGCGSNDNNDN	Dap-seq OMalley et al.(2016) ERF4_colamp_a	0.714	0.735
ERF9 M06670_2.00	Arabidopsis thaliana	YCDCCGCCGYCDHHDYHDYHN	NDRHDRHDDHGRCGGCGGHGR	Dap-seq OMalley et al.(2016) ERF9_col_a	0.713	0.714
ERF9 M06671_2.00	Arabidopsis thaliana	NNHDSCGCCGYCRHWDN	NHWDYGRCGGCGSHDNN	Dap-seq OMalley et al.(2016) ERF9_colamp_a	0.713	0.714
HRE1 M06595_2.00	Arabidopsis thaliana	NHNBMDCCGCCGCCRYHDHHN	NDDHDRYGGCGGCGGHKVNDN	Dap-seq OMalley et al.(2016) ERF73_col_a	0.712	0.714
HRE1 M06596_2.00	Arabidopsis thaliana	HNYHDMHNYCDCCGCCGCCRY	RYGGCGGCGGHGRNDKHDRND	Dap-seq OMalley et al.(2016) ERF73_colamp_a	0.712	0.714
Q2TN80_WHEAT M09715_2.00	Triticum aestivum	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$ERF1_02	0.708	0.714
ERF5 M00721_2.00	Arabidopsis thaliana	NNNGSMRNMN	NKNYKSCNNN	PBM Chang et al.(2013) pTH7197	0.707	0.714
ERF5 M06674_2.00	Arabidopsis thaliana	YCDYCKCCGCCGYCD	HGRCGGCGGMGRHGR	Dap-seq OMalley et al.(2016) ERF5_col_a	0.707	0.714
ERF5 M06675_2.00	Arabidopsis thaliana	NHDBCGCCGCCRYHDNHDNNN	NNNHDNHDRYGGCGGCGVHDN	Dap-seq OMalley et al.(2016) ERF5_colamp_a	0.707	0.714
CRF3 M01633_2.00	Arabidopsis thaliana	NNGCCRNNN	NNNYGGCNN	PBM Weirauch et al.(2014) pTH8110	0.704	0.694
CRF2 M01622_2.00	Arabidopsis thaliana	SCGCCGCC	GGCGGCGS	PBM Weirauch et al.(2014) pTH8680	0.704	0.694
ERF5_TOBAC M09729_2.00	Nicotiana tabacum	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$ERF4_02	0.703	0.694
ERF113 M01629_2.00	Arabidopsis thaliana	NNGCCGHHNN	NNDDCGGCNN	PBM Weirauch et al.(2014) pTH8097	0.703	0.714
ERF096 M01630_2.00	Arabidopsis thaliana	NVGCCGNCNN	NNGNCGGCBN	PBM Weirauch et al.(2014) pTH7909	0.696	0.714
ERF091 M06638_2.00	Arabidopsis thaliana	NNHNYHDCCGCCGCCRY	RYGGCGGCGGHDRNDNN	Dap-seq OMalley et al.(2016) AT4G18450_col_a	0.694	0.714
PK02330.1 M01095_2.00	Cannabis sativa	NNNGCCGBCN	NGVCGGCNNN	PBM Lambert et al.(2019) pTH10093	0.692	0.673
ERF1A M00848_2.00	Arabidopsis thaliana	NNNNRNN	NNYNNNN	PBM Franco-Zorrilla et al.(2014) ATERF1	0.690	0.714
ERF1A M00720_2.00	Arabidopsis thaliana	NMGCCRNCN	NGNYGGCKN	PBM Chang et al.(2013) pTH7202	0.690	0.714
ERF2 M01631_2.00	Arabidopsis thaliana	NNNGCCGNCN	NGNCGGCNNN	PBM Weirauch et al.(2014) pTH8113	0.690	0.714
ERF2 M06672_2.00	Arabidopsis thaliana	HHNHHNYHDYCGCCGCCRYND	HNRYGGCGGCGRHDRNDDNDD	Dap-seq OMalley et al.(2016) ERF2_col_a	0.690	0.714
ERF2 M06673_2.00	Arabidopsis thaliana	NNNNNNNHNNHDSMGCCGCCR	YGGCGGCKSHDNNDNNNNNNN	Dap-seq OMalley et al.(2016) ERF2_colamp_a	0.690	0.714
CRF4 M01626_2.00	Arabidopsis thaliana	SCGCCGCC	GGCGGCGS	PBM Weirauch et al.(2014) pTH8261	0.689	0.714
CRF4 M06645_2.00	Arabidopsis thaliana	BMDCCGCCGCCRCHDHHDCYN	NRGHDDHDGYGGCGGCGGHKV	Dap-seq OMalley et al.(2016) CRF4_col_a	0.689	0.714
CRF4 M06646_2.00	Arabidopsis thaliana	YCDYCGCCGCCGYYD	HRRCGGCGGCGRHGR	Dap-seq OMalley et al.(2016) CRF4_colamp_a	0.689	0.714
LEP M06661_2.00	Arabidopsis thaliana	NBCKCCGCCGYHDHHDYHNHH	DDNDRHDDHDRCGGCGGMGVN	Dap-seq OMalley et al.(2016) LEP_col_a	0.687	0.673
Q5Y836_TOBAC M09732_2.00	Nicotiana tabacum	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$ERF5_02	0.686	0.714
ERF3 M01607_2.00	Arabidopsis thaliana	CGCCGSCR	YGSCGGCG	PBM Weirauch et al.(2014) pTH8109	0.686	0.673
ERF3 M06584_2.00	Arabidopsis thaliana	YHDYCKCCGCCGYHD	HDRCGGCGGMGRHDR	Dap-seq OMalley et al.(2016) ERF3_col_a	0.686	0.673
ERF3 M06585_2.00	Arabidopsis thaliana	NNHHDNHNNYDCCGCCGYCR	YGRCGGCGGHRNNDNHDDNN	Dap-seq OMalley et al.(2016) ERF3_colamp_a	0.686	0.673
ERF8 M01608_2.00	Arabidopsis thaliana	MGCCGNMNNN	NNNKNCGGCK	PBM Weirauch et al.(2014) pTH8095	0.684	0.714
ERF8 M06586_2.00	Arabidopsis thaliana	NYHDYCKCCGCCGYH	DRCGGCGGMGRHDRN	Dap-seq OMalley et al.(2016) ERF8_col_a	0.684	0.714
ERF8 M06587_2.00	Arabidopsis thaliana	HNNHDSCGCCGYCRHHDN	NHDDYGRCGGCGSHDNND	Dap-seq OMalley et al.(2016) ERF8_colamp_a	0.684	0.714
RAP2-3 M01050_2.00	Arabidopsis thaliana	CGCCGCCR	YGGCGGCG	PBM Sullivan et al.(2014) pTH8811	0.684	0.714
RAP2-3 M00847_2.00	Arabidopsis thaliana	NMGCCGCCDN	NHGGCGGCKN	PBM Franco-Zorrilla et al.(2014) RAP2.3	0.684	0.714
A4F248_TOBAC M09725_2.00	Nicotiana tabacum	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$WRAF1_01	0.683	0.776
A4F249_TOBAC M09726_2.00	Nicotiana tabacum	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$WRAF2_01	0.683	0.776
For this family, TFs with SR scores > 0.677* will likely have a similar motif*

DNA Binding Domains

Protein ID	Domain	From	To	Sequence
fgenesh1_pm.chr_4_#_35	AP2	33	84	SQYRGVRQRPWGSWAAEIRDPNRGARLWLGTFDTAEEAARAYDAAARHIRGP

Links
Other AP2 family TFs
Other *Ostreococcus RCC809* TFs

1686 Related TFs

Name	Species	Gene ID	Motif Evidence	SR Score	Action
AAEL014322	Aedes aegypti	AAEL014322	I
AALB008334	Anopheles albimanus	AALB008334	I
AARA002094	Anopheles arabiensis	AARA002094	I
AATE018889	Anopheles atroparvus	AATE018889	I
ACHR010174	Anopheles christyi	ACHR010174	I
ACOM034431	Anopheles coluzzii	ACOM034431	I
ACUA006973	Anopheles culicifacies	ACUA006973	I
ADAC002492	Anopheles darlingi	ADAC002492	I
ADIR010448	Anopheles dirus	ADIR010448	I
AEPI006062	Anopheles epiroticus	AEPI006062	I
AFAF001067	Anopheles farauti	AFAF001067	I
AFUN011634	Anopheles funestus	AFUN011634	I
AMAM006832	Anopheles maculatus	AMAM006832	I
AMEM001613	Anopheles merus	AMEM001613	I
AMIN003460	Anopheles minimus	AMIN003460	I
AQUA000514	Anopheles quadriannulatus	AQUA000514	I
ASTEI05690	Anopheles stephensi	ASTEI05690	I
CapteG36721	Capitella teleta	CapteG36721	I
Cflo_03885--XP_001120527.1_APIME	Camponotus floridanus	Cflo_03885--XP_001120527.1_APIME	I
CGI_10007380	Crassostrea gigas	CGI_10007380	I
CLEC002330	Cimex lectularius	CLEC002330	I
CPIJ005345	Culex quinquefasciatus	CPIJ005345	I
CpipJ_CPIJ005345	Culex pipiens	CpipJ_CPIJ005345	I
csin100742	Clonorchis sinensis	csin100742	I
D915_09890	Fasciola hepatica	D915_09890	I
D917_06339	Trichinella nativa	D917_06339	I
D918_04086	Trichuris suis	D918_04086	I
ECANG7_02004	Echinococcus canadensis	ECANG7_02004	I
ECPE_0001678601	Echinostoma caproni	ECPE_0001678601	I
EFV52759	Trichinella spiralis	EFV52759	I
EmuJ_001053100	Echinococcus multilocularis	EmuJ_001053100	I
estExt_fgenesh2_pg.C_2260029	Branchiostoma floridae	estExt_fgenesh2_pg.C_2260029	I
estExt_gwp.C_290160	Branchiostoma floridae	estExt_gwp.C_290160	I
EVEC_0000720901	Enterobius vermicularis	EVEC_0000720901	I
fgenesh2_pg.scaffold_226000031	Branchiostoma floridae	fgenesh2_pg.scaffold_226000031	I
fgenesh2_pg.scaffold_226000032	Branchiostoma floridae	fgenesh2_pg.scaffold_226000032	I
fgenesh2_pg.scaffold_29000123	Branchiostoma floridae	fgenesh2_pg.scaffold_29000123	I
GA10192	Drosophila pseudoobscura	FBgn0070251	I
GB55306	Apis mellifera	GB55306	I
GD18361	Drosophila simulans	FBgn0189889	I
GE23932	Drosophila yakuba	FBgn0241076	I
GF18746	Drosophila ananassae	FBgn0095763	I
GG12413	Drosophila erecta	FBgn0104701	I
GH13904	Drosophila grimshawi	FBgn0121380	I
GI24830	Drosophila mojavensis	FBgn0147551	I
GJ24474	Drosophila virilis	FBgn0211554	I
GK22777	Drosophila willistoni	FBgn0224749	I
GL13832	Drosophila persimilis	FBgn0151437	I
GM23547	Drosophila sechellia	FBgn0178413	I
HmN_000553800	Hymenolepis microstoma	HmN_000553800	I
HNAJ_0001324201	Hymenolepis nana	HNAJ_0001324201	I
Hsal_05065--XP_001120527.1_APIME	Harpegnathos saltator	Hsal_05065--XP_001120527.1_APIME	I
LCUP007809	Lucilia cuprina	LCUP007809	I
LDEC009949	Leptinotarsa decemlineata	LDEC009949	I
LLOJ004446	Lutzomyia longipalpis	LLOJ004446	I
MCOS_0000168001	Mesocestoides corti	MCOS_0000168001	I
myod1	Tetraodon nigroviridis	ENSTNIG00000002808	I
nau	Drosophila melanogaster	FBgn0002922	D
nRc.2.0.1.g24248	Romanomermis culicivorax	nRc.2.0.1.g24248	I
NV10294	Nasonia vitripennis	NV10294	I
Ocbimv22002759m.g	Octopus bimaculoides	Ocbimv22002759m.g	I
PHUM424120	Pediculus humanus	PHUM424120	I
RPRC009735	Rhodnius prolixus	RPRC009735	I
Sakowv30008488m.g	Saccoglossus kowalevskii	Sakowv30008488m.g	I
SBAD_0001285401	Soboliphyme baturini	SBAD_0001285401	I
Sjc_0011830	Schistosoma japonicum	Sjc_0011830	I
Smp_167400	Schistosoma mansoni	Smp_167400	I
SMU15001149	Schmidtea mediterranea	SMU15001149	I
SMUV_0000995901	Syphacia muris	SMUV_0000995901	I
SPER_0001779001	Spirometra erinaceieuropaei	SPER_0001779001	I
SPER_0002215301	Spirometra erinaceieuropaei	SPER_0002215301	I
SPU_021119	Strongylocentrotus purpuratus	SPU_021119	I
SSLN_0000613901	Schistocephalus solidus	SSLN_0000613901	I
T265_10140	Opisthorchis viverrini	T265_10140	I
TASK_0000583801	Taenia asiatica	TASK_0000583801	I
TC015855	Tribolium castaneum	TC015855	I
TMUE_s0045001800	Trichuris muris	TMUE_s0045001800	I
TRE_0000306101	Trichobilharzia regenti	TRE_0000306101	I
TsM_000079400	Taenia solium	TsM_000079400	I
TTRE_0000002701	Trichuris trichiura	TTRE_0000002701	I
YQE_11476	Dendroctonus ponderosae	YQE_11476	I

fgenesh1_pm.chr_4_#_35 (Ostreococcus RCC809) AP2

TF Information

Directly determined binding motifs

Motifs from related TFs

DNA Binding Domains

Links

1686 Related TFs

fgenesh1_pm.chr_4_#_35 **(Ostreococcus RCC809)
AP2**