Cagra.0712s0008 (Capsella grandiflora)
AP2

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00847 (AP2) IPR001471 Cagra.0712s0008 T007710_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
DREB2G
M06662_2.00 		Arabidopsis thaliana
DCCRCCGCYDYHDYH
DRHDRHRGCGGYGGH		 Dap-seq
OMalley et al.(2016)
At5g18450_col_a 		0.800 0.980
DREB2D
M01611_2.00 		Arabidopsis thaliana
NNRCCGHNN
NNDCGGYNN		 PBM
Weirauch et al.(2014)
pTH8108 		0.719 0.816
DREB2D
M06597_2.00 		Arabidopsis thaliana
YHNYYDCCRCCGYYD
HRRCGGYGGHRRNDR		 Dap-seq
OMalley et al.(2016)
At1g75490_col_a 		0.719 0.816
DREB2D
M06598_2.00 		Arabidopsis thaliana
HNNHDYCACCGHYWN
NWRDCGGTGRHDNND		 Dap-seq
OMalley et al.(2016)
At1g75490_colamp_a 		0.719 0.816
PK07402.1
M01097_2.00 		Cannabis sativa
NVRCCGMCH
DGKCGGYBN		 PBM
Lambert et al.(2019)
pTH11436 		0.699 0.796
PK08602.1
M01098_2.00 		Cannabis sativa
NYCACCGCYN
NRGCGGTGRN		 PBM
Lambert et al.(2019)
pTH11421 		0.688 0.776
Q8H769_WHEAT
M09721_2.00 		Triticum aestivum Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$DREB1_01 		0.686 0.776
For this family, TFs with SR scores > 0.677 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Cagra.0712s0008.1.p AP2 32 83

Links

Other AP2 family TFs
Other Capsella grandiflora TFs

187 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
AAEL000577 Aedes aegypti AAEL000577 I 0.000
AALB004223 Anopheles albimanus AALB004223 I 0.000
ACEP20141 Atta cephalotes ACEP20141 I 0.000
ACOM038990 Anopheles coluzzii ACOM038990 I 0.000
ACYPI29050 Acyrthosiphon pisum ACYPI29050 I 0.000
AEPI006364 Anopheles epiroticus AEPI006364 I 0.000
AFAF000103 Anopheles farauti AFAF000103 I 0.000
AGAP005564 Anopheles gambiae AGAP005564 I 0.000
AMEC008183 Anopheles melas AMEC008183 I 0.000
AMEM013718 Anopheles merus AMEM013718 I 0.000
AMIN010880 Anopheles minimus AMIN010880 I 0.000
ASTEI02169 Anopheles stephensi ASTEI02169 I 0.000
BGIBMGA003479 Bombyx mori BGIBMGA003479 I 0.000
Cflo_10585--XP_394553.3_APIME Camponotus floridanus Cflo_10585--XP_394553.3_APIME I 0.000
DAPPUDRAFT_64332 Daphnia pulex DAPPUDRAFT_64332 I 0.000
GA30279 Drosophila pseudoobscura FBgn0263821 I 0.000
GB46725 Apis mellifera GB46725 I 0.000
GF11678 Drosophila ananassae FBgn0088718 I 0.000
GG21828 Drosophila erecta FBgn0114006 I 0.000
GH22029 Drosophila grimshawi FBgn0129490 I 0.000
GI19118 Drosophila mojavensis FBgn0141857 I 0.000
GK22232 Drosophila willistoni FBgn0224217 I 0.000
GL17227 Drosophila persimilis FBgn0154830 I 0.000
GM21828 Drosophila sechellia FBgn0176705 I 0.000
grh Drosophila melanogaster FBgn0259211 D 0.000
grh Drosophila yakuba FBgn0067967 I 0.000
HMEL013326 Heliconius melpomene HMEL013326 I 0.000
Hsal_11404--XP_394553.3_APIME Harpegnathos saltator Hsal_11404--XP_394553.3_APIME I 0.000
ISCW008081 Ixodes scapularis ISCW008081 I 0.000
KGM_04625 Danaus plexippus KGM_04625 I 0.000
LCUP010302 Lucilia cuprina LCUP010302 I 0.000
LDEC013994 Leptinotarsa decemlineata LDEC013994 I 0.000
LLOJ002492 Lutzomyia longipalpis LLOJ002492 I 0.000
MCINX002723 Melitaea cinxia MCINX002723 I 0.000
MDOA000476 Musca domestica MDOA000476 I 0.000
MhA1_Contig3342.frz3.fgene1 Meloidogyne hapla MhA1_Contig3342.frz3.fgene1 I 0.000
NBR_0001111401 Nippostrongylus brasiliensis NBR_0001111401 I 0.000
nDi.2.2.2.g12300 Dirofilaria immitis nDi.2.2.2.g12300 I 0.000
NV11321 Nasonia vitripennis NV11321 I 0.000
RPRC012881 Rhodnius prolixus RPRC012881 I 0.000
SINV20218 Solenopsis invicta SINV20218 I 0.000
SMAR000355 Strigamia maritima SMAR000355 I 0.000
TC004589 Tribolium castaneum TC004589 I 0.000
tetur01g12650 Tetranychus urticae tetur01g12650 I 0.000
YQE_09165 Dendroctonus ponderosae YQE_09165 I 0.000