Gorai.004G289800 (Gossypium raimondii)
AP2

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00847 (AP2) IPR001471 Gorai.004G289800 T008540_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
TINY
M01094_2.00 		Arabidopsis thaliana
NHRCCGACAN
NTGTCGGYDN		 PBM
Lambert et al.(2019)
pTH11541 		0.762 0.900
TINY
M06669_2.00 		Arabidopsis thaliana
HNYCRCCGACANHDN
NHDNTGTCGGYGRND		 Dap-seq
OMalley et al.(2016)
TINY_col_a 		0.762 0.900
ERF043
M01627_2.00 		Arabidopsis thaliana
YRCCGACA
TGTCGGYR		 PBM
Weirauch et al.(2014)
pTH7413 		0.754 0.880
ERF043
M06651_2.00 		Arabidopsis thaliana
NNYCACCGACANHNNN
NNNDNTGTCGGTGRNN		 Dap-seq
OMalley et al.(2016)
At4g32800_colamp_a 		0.754 0.880
ERF043
M06652_2.00 		Arabidopsis thaliana
NNYCACCGACANHNNH
DNNDNTGTCGGTGRNN		 Dap-seq
OMalley et al.(2016)
At4g32800_col 		0.754 0.880
ERF034
M06614_2.00 		Arabidopsis thaliana
NHNYCACCGACANHD
HDNTGTCGGTGRNDN		 Dap-seq
OMalley et al.(2016)
At2g44940_col_a 		0.739 0.860
ERF034
M06615_2.00 		Arabidopsis thaliana
NDBCACCGACANH
DNTGTCGGTGVHN		 Dap-seq
OMalley et al.(2016)
At2g44940_colamp_a 		0.739 0.860
ERF035
M06631_2.00 		Arabidopsis thaliana
YCACCGACANWDNH
DNHWNTGTCGGTGR		 Dap-seq
OMalley et al.(2016)
AT3G60490_col_a 		0.730 0.840
ERF035
M06632_2.00 		Arabidopsis thaliana
NNBCACCGACAHWNNN
NNNWDTGTCGGTGVNN		 Dap-seq
OMalley et al.(2016)
AT3G60490_colamp_a 		0.730 0.840
Q8LKX0_MAIZE
M09722_2.00 		Zea mays Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$DBF2_01 		0.702 0.860
Q5MAR7_BRANA
M09742_2.00 		Brassica napus Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$DREBIII1_01 		0.701 0.840
Q3HS44_BRANA
M09741_2.00 		Brassica napus Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$DREBIII2_01 		0.701 0.840
Q3HS43_BRANA
M09740_2.00 		Brassica napus Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$DREBIII3_01 		0.701 0.840
AT3G16280
M06618_2.00 		Arabidopsis thaliana
NDNCACCGACANHN
NDNTGTCGGTGNHN		 Dap-seq
OMalley et al.(2016)
AT3G16280_col_a 		0.696 0.840
AT3G16280
M06619_2.00 		Arabidopsis thaliana
BCACCGACAHWNNN
NNNWDTGTCGGTGV		 Dap-seq
OMalley et al.(2016)
AT3G16280_colamp_a 		0.696 0.840
ERF039
M01620_2.00 		Arabidopsis thaliana
NNRCCGACDN
NHGTCGGYNN		 PBM
Weirauch et al.(2014)
pTH8101 		0.692 0.840
ERF039
M06635_2.00 		Arabidopsis thaliana
HNNHDYCRCCGMCRN
NYGKCGGYGRHDNND		 Dap-seq
OMalley et al.(2016)
At4g16750_col_a 		0.692 0.840
ERF039
M06636_2.00 		Arabidopsis thaliana
NNNNNNYCACCGACAHH
DDTGTCGGTGRNNNNNN		 Dap-seq
OMalley et al.(2016)
At4g16750_colamp_a 		0.692 0.840
ERF038
M06608_2.00 		Arabidopsis thaliana
NHNHHDYCRCCGACA
TGTCGGYGRHDDNDN		 Dap-seq
OMalley et al.(2016)
ERF38_col_a 		0.692 0.820
ERF037
M00843_2.00 		Arabidopsis thaliana
NRCCGACRN
NYGTCGGYN		 PBM
Franco-Zorrilla et al.(2014)
At1g77200 		0.684 0.840
ERF037
M06599_2.00 		Arabidopsis thaliana
YCRCCGACAHHNNH
DNNDDTGTCGGYGR		 Dap-seq
OMalley et al.(2016)
AT1G77200_col_a 		0.684 0.840
ERF037
M06600_2.00 		Arabidopsis thaliana
NNYACCGACAHN
NDTGTCGGTRNN		 Dap-seq
OMalley et al.(2016)
AT1G77200_colamp_a 		0.684 0.840
For this family, TFs with SR scores > 0.677 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Gorai.004G289800.1 AP2 50 101

Links

Other AP2 family TFs
Other Gossypium raimondii TFs

422 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
AMTR_s00087p00039380 Amborella trichopoda AMTR_s00087p00039380 N
ATMYB16 Arabidopsis thaliana AT5G15310 I
Cagra.0876s0043 Capsella grandiflora Cagra.0876s0043 N
Cagra.5789s0001 Capsella grandiflora Cagra.5789s0001 N
cassava15703.m1 Manihot esculenta cassava15703.m1 N
chr1.CM0600.120.nd Lotus japonicus chr1.CM0600.120.nd N
Eucgr.B03766 Eucalyptus grandis Eucgr.B03766 N
Gorai.012G186500 Gossypium raimondii Gorai.012G186500 I
LjSGA_014958.1 Lotus japonicus LjSGA_014958.1 N
LjSGA_057664.1 Lotus japonicus LjSGA_057664.1 N
MDP0000413041 Malus domestica MDP0000413041 N
MDP0000879675 Malus domestica MDP0000879675 N
mgf023771m Mimulus guttatus mgf023771m N
MLOC_23224 Hordeum vulgare MLOC_23224 N
MLOC_52896 Hordeum vulgare MLOC_52896 I
MLOC_71332 Hordeum vulgare MLOC_71332 N
OB06G28240 Oryza brachyantha OB06G28240 N
OGLUM11G01380 Oryza glumaepatula OGLUM11G01380 N
OLONG_025203 Oryza longistaminata OLONG_025203 N
OPUNC01G25350 Oryza punctata OPUNC01G25350 N
Pavir.Db00878 Panicum virgatum Pavir.Db00878 N
Pavir.Eb00654 Panicum virgatum Pavir.Eb00654 I
Pavir.Eb03517 Panicum virgatum Pavir.Eb03517 I
PDK_20s1922781g001 Phoenix dactylifera PDK_20s1922781g001 N
PGSC0003DMG400014550 Solanum tuberosum PGSC0003DMG400014550 I
PGSC0003DMG401010883 Solanum tuberosum PGSC0003DMG401010883 N
POPTR_0017s10780 Populus trichocarpa POPTR_0017s10780 N
SapurV1A.0006s0790 Salix purpurea SapurV1A.0006s0790 I
SapurV1A.0021s0930 Salix purpurea SapurV1A.0021s0930 I
TCM_041010 Theobroma cacao TCM_041010 I
Traes_3AL_F09C7CA19 Triticum aestivum Traes_3AL_F09C7CA19 N
Traes_3DL_D9A29948B Triticum aestivum Traes_3DL_D9A29948B N
Traes_4AL_17C974117 Triticum aestivum Traes_4AL_17C974117 N
Traes_6AL_C0A2B4F041 Triticum aestivum Traes_6AL_C0A2B4F041 N
Traes_7AS_FD974A17F Triticum aestivum Traes_7AS_FD974A17F N
Traes_7DS_76515C538 Triticum aestivum Traes_7DS_76515C538 N