CIS-BP Database: Catalog of Inferred Sequence Binding Preferences

TF Information

MDP0000264124 *(Malus domestica)* AP2
Pfam ID	Interpro ID	Gene ID	CIS-BP ID	Sequence source
PF00847 (AP2)	IPR001471	MDP0000264124	T009060_2.00	JGI:Phytozome (2018-Apr-12)
Directly determined binding motifs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
No direct experiments
Motifs from related TFs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
LEP M06661_2.00	Arabidopsis thaliana	NBCKCCGCCGYHDHHDYHNHH	DDNDRHDDHDRCGGCGGMGVN	Dap-seq OMalley et al.(2016) LEP_col_a	0.854	0.940
Q84J59_MAIZE M09717_2.00	Zea mays	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$BD1_01	0.823	0.860
ERF086 M06663_2.00	Arabidopsis thaliana	HHDYCKCCGCCGYHD	HDRCGGCGGMGRHDD	Dap-seq OMalley et al.(2016) PUCHI_col_a	0.819	0.880
ERF086 M06664_2.00	Arabidopsis thaliana	NNNNHDHCKCCGCCGYHDHHDHNNN	NNNDHDDHDRCGGCGGMGDHDNNNN	Dap-seq OMalley et al.(2016) PUCHI_colamp_a	0.819	0.880
ERF087 M06573_2.00	Arabidopsis thaliana	HHDYCKCCGCCGYYD	HRRCGGCGGMGRHDD	Dap-seq OMalley et al.(2016) AT1G28160_col_a	0.788	0.800
ERF087 M06574_2.00	Arabidopsis thaliana	HDYCKCCGCCGYCR	YGRCGGCGGMGRHD	Dap-seq OMalley et al.(2016) AT1G28160_colamp_a	0.788	0.800
ERF4 M01616_2.00	Arabidopsis thaliana	VCGCCGCC	GGCGGCGB	PBM Weirauch et al.(2014) pTH8156	0.740	0.720
ERF4 M06616_2.00	Arabidopsis thaliana	YCDCCGCCGCCRHHD	HDDYGGCGGCGGHGR	Dap-seq OMalley et al.(2016) ERF4_col_a	0.740	0.720
ERF4 M06617_2.00	Arabidopsis thaliana	NHNNHNSCGCCGYCRHHDNN	NNHDDYGRCGGCGSNDNNDN	Dap-seq OMalley et al.(2016) ERF4_colamp_a	0.740	0.720
ERF096 M01630_2.00	Arabidopsis thaliana	NVGCCGNCNN	NNGNCGGCBN	PBM Weirauch et al.(2014) pTH7909	0.734	0.720
ERF9 M06670_2.00	Arabidopsis thaliana	YCDCCGCCGYCDHHDYHDYHN	NDRHDRHDDHGRCGGCGGHGR	Dap-seq OMalley et al.(2016) ERF9_col_a	0.728	0.740
ERF9 M06671_2.00	Arabidopsis thaliana	NNHDSCGCCGYCRHWDN	NHWDYGRCGGCGSHDNN	Dap-seq OMalley et al.(2016) ERF9_colamp_a	0.728	0.740
PK19363.1 M01100_2.00	Cannabis sativa	NMGCCGHMNN	NNKDCGGCKN	PBM Lambert et al.(2019) pTH10138	0.727	0.700
PK19363.1 M01643_2.00	Cannabis sativa	CGCCGYCD	HGRCGGCG	PBM Weirauch et al.(2014) pTH9609	0.727	0.700
ERF4_TOBAC M09728_2.00	Nicotiana tabacum	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$ERF3_02	0.725	0.700
Q5Y836_TOBAC M09732_2.00	Nicotiana tabacum	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$ERF5_02	0.712	0.700
ERF14 M01045_2.00	Arabidopsis thaliana	NVGCCGNCN	NGNCGGCBN	PBM Sullivan et al.(2014) pTH9793	0.710	0.720
ERF10 M06562_2.00	Arabidopsis thaliana	NNHNNHNHHDYCGCCGCCRYN	NRYGGCGGCGRHDDNDNNDNN	Dap-seq OMalley et al.(2016) ERF10_col_a	0.707	0.700
ERF10 M06563_2.00	Arabidopsis thaliana	HDSCGCCGCCRHHDNNNNNN	NNNNNNHDDYGGCGGCGSHD	Dap-seq OMalley et al.(2016) ERF10_colamp_a	0.707	0.700
ERF8 M01608_2.00	Arabidopsis thaliana	MGCCGNMNNN	NNNKNCGGCK	PBM Weirauch et al.(2014) pTH8095	0.700	0.680
ERF8 M06586_2.00	Arabidopsis thaliana	NYHDYCKCCGCCGYH	DRCGGCGGMGRHDRN	Dap-seq OMalley et al.(2016) ERF8_col_a	0.700	0.680
ERF8 M06587_2.00	Arabidopsis thaliana	HNNHDSCGCCGYCRHHDN	NHDDYGRCGGCGSHDNND	Dap-seq OMalley et al.(2016) ERF8_colamp_a	0.700	0.680
HRE1 M06595_2.00	Arabidopsis thaliana	NHNBMDCCGCCGCCRYHDHHN	NDDHDRYGGCGGCGGHKVNDN	Dap-seq OMalley et al.(2016) ERF73_col_a	0.695	0.640
HRE1 M06596_2.00	Arabidopsis thaliana	HNYHDMHNYCDCCGCCGCCRY	RYGGCGGCGGHGRNDKHDRND	Dap-seq OMalley et al.(2016) ERF73_colamp_a	0.695	0.640
ERF1B M01619_2.00	Arabidopsis thaliana	NMGCCGCCRN	NYGGCGGCKN	PBM Weirauch et al.(2014) pTH8795	0.693	0.680
ERF1B M06626_2.00	Arabidopsis thaliana	NHNNHDYMGCCGCCRYHDNHDNNNNNNN	NNNNNNNHDNHDRYGGCGGCKRHDNNDN	Dap-seq OMalley et al.(2016) ERF1_col_a	0.693	0.680
ERF1B M06627_2.00	Arabidopsis thaliana	MGCCGCCD	HGGCGGCK	Dap-seq OMalley et al.(2016) ERF1_colamp_a	0.693	0.680
ERF1B M09703_2.00	Arabidopsis thaliana	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$ERF1_Q2_01	0.693	0.680
ERF1B M09704_2.00	Arabidopsis thaliana	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$ERF1_Q2	0.693	0.680
ERF7 M01617_2.00	Arabidopsis thaliana	NGCCGNMNNN	NNNKNCGGCN	PBM Weirauch et al.(2014) pTH7606	0.686	0.640
ERF7 M06620_2.00	Arabidopsis thaliana	YHNHYNYYDYCDCCGCCGYCD	HGRCGGCGGHGRHRRNRDNDR	Dap-seq OMalley et al.(2016) ERF7_col_a	0.686	0.640
ERF7 M06621_2.00	Arabidopsis thaliana	NNNHNNHNHHDSCGCCGCCRH	DYGGCGGCGSHDDNDNNDNNN	Dap-seq OMalley et al.(2016) ERF7_colamp_a	0.686	0.640
ERF2_TOBAC M09727_2.00	Nicotiana tabacum	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$ERF2_01	0.678	0.640
For this family, TFs with SR scores > 0.677* will likely have a similar motif*

DNA Binding Domains

Protein ID	Domain	From	To	Sequence
MDP0000264124	AP2	40	91	TRFLGVRRRPWGRYAAEIRDPSTKERHWLGTFDTAEEAALAYDRSARSMRGS

Links
Other AP2 family TFs
Other *Malus domestica* TFs

1142 Related TFs

Name	Species	Gene ID	Motif Evidence	SR Score	Action
AATE012213	Anopheles atroparvus	AATE012213	I
ACEP21757	Atta cephalotes	ACEP21757	I
ACUA005738	Anopheles culicifacies	ACUA005738	I
ACYPI008619	Acyrthosiphon pisum	ACYPI008619	I
ADAC004790	Anopheles darlingi	ADAC004790	I
AFAF008430	Anopheles farauti	AFAF008430	I
AFUN002458	Anopheles funestus	AFUN002458	I
AMAM014008	Anopheles maculatus	AMAM014008	I
BGLB012448	Biomphalaria glabrata	BGLB012448	I
CapteG4919	Capitella teleta	CapteG4919	I
CGI_10011936	Crassostrea gigas	CGI_10011936	I
CLEC000700	Cimex lectularius	CLEC000700	I
CPIJ006366	Culex quinquefasciatus	CPIJ006366	I
CpipJ_CPIJ006366	Culex pipiens	CpipJ_CPIJ006366	I
GA20515	Drosophila pseudoobscura	FBgn0080509	I
GB43258	Apis mellifera	GB43258	I
GD20175	Drosophila simulans	FBgn0191653	I
GE25205	Drosophila yakuba	FBgn0242289	I
GF18117	Drosophila ananassae	FBgn0095135	I
GG16477	Drosophila erecta	FBgn0108708	I
GH19229	Drosophila grimshawi	FBgn0126695	I
GI24263	Drosophila mojavensis	FBgn0146986	I
GK11495	Drosophila willistoni	FBgn0213506	I
gl	Drosophila melanogaster	FBgn0004618	D
gl	Drosophila virilis	FBgn0015211	I
GL23194	Drosophila persimilis	FBgn0160784	I
GM18708	Drosophila sechellia	FBgn0173613	I
HelroG86767	Helobdella robusta	HelroG86767	I
HMEL016965	Heliconius melpomene	HMEL016965	I
ISCW013678	Ixodes scapularis	ISCW013678	I
KGM_06609	Danaus plexippus	KGM_06609	I
LCUP002895	Lucilia cuprina	LCUP002895	I
LotgiG155751	Lottia gigantea	LotgiG155751	I
MCINX014711	Melitaea cinxia	MCINX014711	I
MDOA012721	Musca domestica	MDOA012721	I
ML19062a	Mnemiopsis leidyi	ML19062a	I
NV10631	Nasonia vitripennis	NV10631	I
Ocbimv22030200m.g	Octopus bimaculoides	Ocbimv22030200m.g	I
PHUM530160	Pediculus humanus	PHUM530160	I
PXEA_0003135501	Protopolystoma xenopodis	PXEA_0003135501	I
Sakowv30008117m.g	Saccoglossus kowalevskii	Sakowv30008117m.g	I
SMAR000758	Strigamia maritima	SMAR000758	I
SPU_007599	Strongylocentrotus purpuratus	SPU_007599	I
TC012565	Tribolium castaneum	TC012565	I
tetur07g01570	Tetranychus urticae	tetur07g01570	I
YQE_07567	Dendroctonus ponderosae	YQE_07567	I

MDP0000264124 (Malus domestica) AP2

TF Information

Directly determined binding motifs

Motifs from related TFs

DNA Binding Domains

Links

1142 Related TFs

MDP0000264124 **(Malus domestica)
AP2**