L596_g18623 (Steinernema carpocapsae)
ARID/BRIGHT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF01388 (ARID) IPR001606 L596_g18623 T016583_2.00 WormBase:ParaSite (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
cfi-1
M01667_2.00 		Caenorhabditis elegans
NNATHDNN
NNHDATNN		 PBM
Weirauch et al.(2014)
pTH5118 		0.785 0.977
ARID3A
M01658_2.00 		Microcebus murinus
NDATHAWDN
NHWTDATHN		 PBM
Weirauch et al.(2014)
pTH9214 		0.720 0.802
Arid3a
M00115_2.00 		Mus musculus
NDATHADDN
NHHTDATHN		 PBM
Badis et al.(2009)
Arid3a_3875 		0.720 0.802
Arid3a
M01660_2.00 		Mus musculus
NDATHAADN
NHTTDATHN		 PBM
Weirauch et al.(2014)
pTH5169 		0.720 0.802
ARID3A
M01662_2.00 		Procavia capensis
NNATHDNNN
NNNHDATNN		 PBM
Weirauch et al.(2014)
pTH9384 		0.720 0.802
Arid3a
M02651_2.00 		Mus musculus
ATYAAA
TTTRAT		 SELEX
Mathelier et al.(2014)
MA0151.1 		0.720 0.802
ARID3A
M09766_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$DRI1_01 		0.720 0.802
retn
M01664_2.00 		Drosophila melanogaster
NDATHRNN
NNYDATHN		 PBM
Weirauch et al.(2014)
pTH5119 		0.682 0.756
retn
M03590_2.00 		Drosophila melanogaster
NNATTRATHN
NDATYAATNN		 SELEX
Nitta et al.(2015)
retn_1 		0.682 0.756
retn
M05899_2.00 		Drosophila melanogaster
AATYAAAM
KTTTRATT		 B1H
Zhu et al.(2011)
retn_SANGER_5_FBgn0004795 		0.682 0.756
retn
M09768_2.00 		Drosophila melanogaster
NNRATTAADN
NHTTAATYNN		 Transfac
Matys et al.(2006)
I$DRI_01 		0.682 0.756
DDB_G0275333
M01656_2.00 		Dictyostelium discoideum
NNATHDNNNN
NNNNHDATNN		 PBM
Weirauch et al.(2014)
pTH5168 		0.670 0.419
ACYPI009013
M01655_2.00 		Acyrthosiphon pisum
NDATHAADN
NHTTDATHN		 PBM
Weirauch et al.(2014)
pTH5117 		0.659 0.651
Arid3b
M01659_2.00 		Mus musculus
NNDATTAAWWN
NWWTTAATHNN		 PBM
Weirauch et al.(2014)
pTH4425 		0.657 0.767
GSPATT00004674001
M01665_2.00 		Paramecium tetraurelia
NNATYHNN
NNDRATNN		 PBM
Weirauch et al.(2014)
pTH5124 		0.540 0.360
TTHERM_00243900
M01666_2.00 		Tetrahymena thermophila
NDDATYANN
NNTRATHHN		 PBM
Weirauch et al.(2014)
pTH5128 		0.508 0.326
For this family, TFs with SR scores > 0.422 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
L596_g18623.t1 ARID/BRIGHT 210 296
L596_g18623.t2 ARID/BRIGHT 330 416

Links

Other ARID/BRIGHT family TFs
Other Steinernema carpocapsae TFs

373 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Aan_R014069 Calypte anna Aan_R014069 I
Afo_R003945 Aptenodytes forsteri Afo_R003945 I
B7ZRM8 Xenopus laevis B7ZRM8 I
B7ZRU9 Xenopus laevis B7ZRU9 I
Brh_R009954 Buceros rhinoceros Brh_R009954 I
Cmyd_10009299 Chelonia mydas Cmyd_10009299 I
ENSAMEG00000002052 Ailuropoda melanoleuca ENSAMEG00000002052 I
ENSAPLG00000012134 Anas platyrhynchos ENSAPLG00000012134 I
ENSCSAG00000012539 Chlorocebus sabaeus ENSCSAG00000012539 I
ENSFALG00000008636 Ficedula albicollis ENSFALG00000008636 I
ENSGALG00000009437 Gallus gallus ENSGALG00000009437 I
ENSLOCG00000009557 Lepisosteus oculatus ENSLOCG00000009557 I
ENSMPUG00000017083 Mustela putorius furo ENSMPUG00000017083 I
ENSNLEG00000004964 Nomascus leucogenys ENSNLEG00000004964 I
ENSOARG00000000899 Ovis aries ENSOARG00000000899 I
ENSP00000417899-D1 Bos grunniens ENSP00000417899-D1 I
ENSPPYG00000014277 Pongo abelii ENSPPYG00000014277 I
ENSPSIG00000004908 Pelodiscus sinensis ENSPSIG00000004908 I
ENSSHAG00000017530 Sarcophilus harrisii ENSSHAG00000017530 I
ENSTGUG00000011015 Taeniopygia guttata ENSTGUG00000011015 I
Gfo_R004540 Geospiza fortis Gfo_R004540 I
MECOM Loxodonta africana ENSLAFG00000011479 I
MECOM Bos taurus ENSBTAG00000005871 I
MECOM Canis familiaris ENSCAFG00000014621 I
MECOM Callithrix jacchus ENSCJAG00000002651 I
MECOM Cavia porcellus ENSCPOG00000013572 I
MECOM Dasypus novemcinctus ENSDNOG00000007746 I
MECOM Equus caballus ENSECAG00000020788 I
MECOM Tursiops truncatus ENSTTRG00000002158 I
Mecom Rattus norvegicus ENSRNOG00000012645 I
MECOM Pan troglodytes ENSPTRG00000015601 I
MECOM Otolemur garnettii ENSOGAG00000012812 I
MECOM Oryctolagus cuniculus ENSOCUG00000010171 I
MECOM Anolis carolinensis ENSACAG00000015620 I
Mecom Mus musculus ENSMUSG00000027684 D
MECOM Felis catus ENSFCAG00000012665 I
MECOM Monodelphis domestica ENSMODG00000016133 I
MECOM Myotis lucifugus ENSMLUG00000015749 I
MECOM Meleagris gallopavo ENSMGAG00000010302 I
MECOM Homo sapiens ENSG00000085276 D
MECOM Gorilla gorilla ENSGGOG00000013086 I
mecom.L Xenopus laevis XB-GENE-980198 I
Myotis_brandtii_MECOM_10024770 Myotis brandtii Myotis_brandtii_MECOM_10024770 I
Pvit_19180 Pogona vitticeps Pvit_19180 I
Tal_R005471 Tyto alba Tal_R005471 I