Gfo_R004540 (Geospiza fortis)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00096 (zf-C2H2) IPR007087 Gfo_R004540 T135711_2.00 GigaDB (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
MECOM
M08862_2.00 		Homo sapiens
HNTNTTATCTTRTCWN
NWGAYAAGATAANAND		 Misc
Kulakovskiy et al.(2013)
EVI1_HUMAN.H11MO.0.B 		0.823 0.991
MECOM
M10125_2.00 		Homo sapiens
TTATCTTATCTTRTCW
WGAYAAGATAAGATAA		 Transfac
Matys et al.(2006)
V$EVI1_01 		0.823 0.991
MECOM
M10126_2.00 		Homo sapiens
TTATCTTRTCH
DGAYAAGATAA		 Transfac
Matys et al.(2006)
V$EVI1_02 		0.823 0.991
MECOM
M10127_2.00 		Homo sapiens
TTATCTTATCT
AGATAAGATAA		 Transfac
Matys et al.(2006)
V$EVI1_03 		0.823 0.991
MECOM
M10128_2.00 		Homo sapiens
TAWYYWDWYHTATYH
DRATADRAHWRRAWA		 Transfac
Matys et al.(2006)
V$EVI1_04 		0.823 0.991
MECOM
M10129_2.00 		Homo sapiens
HTATCTTATCT
AGATAAGATAD		 Transfac
Matys et al.(2006)
V$EVI1_05 		0.823 0.991
MECOM
M10130_2.00 		Homo sapiens
TTATCTTGT
ACAAGATAA		 Transfac
Matys et al.(2006)
V$EVI1_06 		0.823 0.991
MECOM
M10131_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$EVI1_Q3 		0.823 0.991
MECOM
M10132_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$EVI_Q6 		0.823 0.991
Mecom
M02667_2.00 		Mus musculus
KNTTATCTTRTCTH
DAGAYAAGATAANM		 SELEX
Mathelier et al.(2014)
MA0029.1 		0.818 0.978
Mecom
M08980_2.00 		Mus musculus
HNTNTTATCTTRTCWN
NWGAYAAGATAANAND		 Misc
Kulakovskiy et al.(2013)
EVI1_MOUSE.H11MO.0.B 		0.818 0.978
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Gfo_R004540 C2H2 ZF 21 42
Gfo_R004540 C2H2 ZF 75 97
Gfo_R004540 C2H2 ZF 103 125
Gfo_R004540 C2H2 ZF 131 154
Gfo_R004540 C2H2 ZF 160 182
Gfo_R004540 C2H2 ZF 188 210
Gfo_R004540 C2H2 ZF 217 238
Gfo_R004540 C2H2 ZF 735 757
Gfo_R004540 C2H2 ZF 763 786
Gfo_R004540 C2H2 ZF 792 814

Links

Other C2H2 ZF family TFs
Other Geospiza fortis TFs

52 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
ENSFALG00000008636 Ficedula albicollis ENSFALG00000008636 I 0.827
ENSAMEG00000002052 Ailuropoda melanoleuca ENSAMEG00000002052 I 0.823
ENSAPLG00000012134 Anas platyrhynchos ENSAPLG00000012134 I 0.823
MECOM Bos taurus ENSBTAG00000005871 I 0.823
MECOM Canis familiaris ENSCAFG00000014621 I 0.823
MECOM Callithrix jacchus ENSCJAG00000002651 I 0.823
MECOM Cavia porcellus ENSCPOG00000013572 I 0.823
MECOM Dasypus novemcinctus ENSDNOG00000007746 I 0.823
MECOM Equus caballus ENSECAG00000020788 I 0.823
MECOM Felis catus ENSFCAG00000012665 I 0.823
MECOM Homo sapiens ENSG00000085276 D 0.823
ENSGALG00000009437 Gallus gallus ENSGALG00000009437 I 0.823
MECOM Gorilla gorilla ENSGGOG00000013086 I 0.823
MECOM Loxodonta africana ENSLAFG00000011479 I 0.823
MECOM Meleagris gallopavo ENSMGAG00000010302 I 0.823
MECOM Myotis lucifugus ENSMLUG00000015749 I 0.823
ENSMPUG00000017083 Mustela putorius furo ENSMPUG00000017083 I 0.823
ENSNLEG00000004964 Nomascus leucogenys ENSNLEG00000004964 I 0.823
ENSOARG00000000899 Ovis aries ENSOARG00000000899 I 0.823
MECOM Oryctolagus cuniculus ENSOCUG00000010171 I 0.823
MECOM Otolemur garnettii ENSOGAG00000012812 I 0.823
ENSPPYG00000014277 Pongo abelii ENSPPYG00000014277 I 0.823
MECOM Pan troglodytes ENSPTRG00000015601 I 0.823
ENSSHAG00000017530 Sarcophilus harrisii ENSSHAG00000017530 I 0.823
ENSTGUG00000011015 Taeniopygia guttata ENSTGUG00000011015 I 0.823
MECOM Tursiops truncatus ENSTTRG00000002158 I 0.823
Aan_R014069 Calypte anna Aan_R014069 I 0.823
Afo_R003945 Aptenodytes forsteri Afo_R003945 I 0.823
Brh_R009954 Buceros rhinoceros Brh_R009954 I 0.823
ENSP00000417899-D1 Bos grunniens ENSP00000417899-D1 I 0.823
Myotis_brandtii_MECOM_10024770 Myotis brandtii Myotis_brandtii_MECOM_10024770 I 0.823
Tal_R005471 Tyto alba Tal_R005471 I 0.823
Mecom Mus musculus ENSMUSG00000027684 D 0.818
Mecom Rattus norvegicus ENSRNOG00000012645 I 0.818
MECOM Anolis carolinensis ENSACAG00000015620 I 0.817
Pvit_19180 Pogona vitticeps Pvit_19180 I 0.817
MECOM Monodelphis domestica ENSMODG00000016133 I 0.816
MECOM Macaca mulatta ENSMMUG00000002242 I 0.801
ENSPANG00000001637 Papio anubis ENSPANG00000001637 I 0.801
ENSMMUP00000002995 Macaca fascicularis ENSMMUP00000002995 I 0.801
ENSCSAG00000012539 Chlorocebus sabaeus ENSCSAG00000012539 I 0.800
MECOM Ornithorhynchus anatinus ENSOANG00000007585 I 0.800
Cmyd_10009299 Chelonia mydas Cmyd_10009299 I 0.800
ENSPSIG00000004908 Pelodiscus sinensis ENSPSIG00000004908 I 0.794
ENSLACG00000017233 Latimeria chalumnae ENSLACG00000017233 I 0.792
B7ZRU9 Xenopus laevis B7ZRU9 I 0.784
mecom.L Xenopus laevis XB-GENE-980198 I 0.784
ENSLOCG00000009557 Lepisosteus oculatus ENSLOCG00000009557 I 0.781
ENSPFOG00000011975 Poecilia formosa ENSPFOG00000011975 I 0.767
ENSXMAG00000010745 Xiphophorus maculatus ENSXMAG00000010745 I 0.767
B7ZRM8 Xenopus laevis B7ZRM8 I 0.766
mecom.S Xenopus laevis XB-GENE-6448217 I 0.766