CIS-BP Database: Catalog of Inferred Sequence Binding Preferences

TF Information

LjSGA_043546.1 *(Lotus japonicus)* AT hook
Pfam ID	Interpro ID	Gene ID	CIS-BP ID	Sequence source
PF02178 (AT_hook)	IPR017956	LjSGA_043546.1	T018111_2.00	Superfamily (2010-Oct-26)
Directly determined binding motifs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
No direct experiments
Motifs from related TFs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
AHL13 M01672_2.00	Arabidopsis thaliana	NAWWTAWWWN	NWWWTAWWTN	PBM Weirauch et al.(2014) pTH8202	0.991	0.846
BRADI3G55950 M01673_2.00	Brachypodium distachyon	NNNNRHDDN	NHHDYNNNN	PBM Weirauch et al.(2014) pTH9369	0.991	0.846
OS02G0824300 M01688_2.00	Oryza sativa	NNDWAWWN	NWWTWHNN	PBM Weirauch et al.(2014) pTH8406	0.991	0.846
VIT_08s0007g04020 M01689_2.00	Vitis vinifera	DBNDDDDDDN	NHHHHHHNVH	PBM Weirauch et al.(2014) pTH9295	0.991	0.731
FGRRES_17512 M01105_2.00	Fusarium graminearum	NNNDNWWWW	WWWWNHNNN	PBM Lambert et al.(2019) pTH11412	0.991	0.538
TVAG_474020 M01106_2.00	Trichomonas vaginalis	DNWWWAWW	WWTWWWNH	PBM Lambert et al.(2019) pTH11493	0.991	0.500
MTR_4g101990 M01687_2.00	Medicago truncatula	AAAWTAAT	ATTAWTTT	PBM Weirauch et al.(2014) pTH9209	0.991	0.423
SUM1 M00008_2.00	Saccharomyces cerevisiae	NNDWWWH	DWWWHNN	PBM Badis et al.(2008) SUM1_2124	0.991	0.423
PK00377.1 M01107_2.00	Cannabis sativa	DAWWWAWW	WWTWWWTH	PBM Lambert et al.(2019) pTH11338	0.991	0.423
SUM1 M07439_2.00	Saccharomyces cerevisiae	DWAAATWWN	NWWATTTWH	PBM, CSA and or DIP-chip Mathelier et al.(2014) MA0398.1	0.991	0.423
SUM1 M08478_2.00	Saccharomyces cerevisiae	RYGWCASWAAW	WTTWSTGWCRY	Misc DeBoer et al.(2011) YDR310C_383	0.991	0.423
SUM1 M08479_2.00	Saccharomyces cerevisiae	DWAAATWWN	NWWATTTWH	Misc DeBoer et al.(2011) YDR310C_478	0.991	0.423
HMGA1 M09769_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$HMGIY_01	0.991	0.410
HMGA1 M09770_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$HMGIY_Q4	0.991	0.410
ENSPPYG00000004736 M01685_2.00	Pongo abelii	NNNNDWWW	WWWHNNNN	PBM Weirauch et al.(2014) pTH9279	0.991	0.395
Hmga2 M00751_2.00	Mus musculus	NNNNRHWWNN	NNWWDYNNNN	PBM Weirauch et al.(2013) pTH3046	0.991	0.385
Q7DLU9_PEA M09772_2.00	Pisum sativum	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$HMGIY_01	0.991	0.385
HMGA2 M09771_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$HMGA2_01	0.991	0.385
ANIA_01690 M01675_2.00	Aspergillus nidulans	NNNNRHDDN	NHHDYNNNN	PBM Weirauch et al.(2014) pTH8216	0.991	0.351
BRADI5G22430 M01674_2.00	Brachypodium distachyon	VNRDDDHDD	HHDHHHYNB	PBM Weirauch et al.(2014) pTH9242	0.991	0.346
NCU05635 M01694_2.00	Neurospora crassa	NNNWWWWNNN	NNNWWWWNNN	PBM Weirauch et al.(2014) pTH8863	0.991	0.316
phf21ab M01678_2.00	Danio rerio	NNNDNADW	WHTNHNNN	PBM Weirauch et al.(2014) pTH9254	0.991	0.308
phf21ab M01680_2.00	Gasterosteus aculeatus	AAAAWAAA	TTTWTTTT	PBM Weirauch et al.(2014) pTH9180	0.991	0.308
Setbp1 M01683_2.00	Mus musculus	NDNNNNNNHN	NDNNNNNNHN	PBM Weirauch et al.(2014) pTH1294	0.991	0.308
Ahctf1 M00750_2.00	Mus musculus	AAAWAWAW	ATWTWTTT	PBM Weirauch et al.(2013) pTH2361	0.991	0.308
Xrp1 M01686_2.00	Drosophila melanogaster	NNNNDWAWW	WWTWHNNNN	PBM Weirauch et al.(2014) pTH9260	0.991	0.308
FGRRES_05233 M01104_2.00	Fusarium graminearum	NNNDWWAWWH	DWWTWWHNNN	PBM Lambert et al.(2019) pTH11377	0.991	0.308
PK26376.1 M01108_2.00	Cannabis sativa	DDWWWAWW	WWTWWWHH	PBM Lambert et al.(2019) pTH11261	0.991	0.308
Xrp1 M05900_2.00	Drosophila melanogaster	RTKRYGYAAT	ATTRCRYMAY	B1H Zhu et al.(2011) Xrp1_CG6272_SANGER_5_FBgn0261113	0.991	0.308
ATEG_07399 M01676_2.00	Aspergillus terreus	DHNNHNDWWW	WWWHNDNNDH	PBM Weirauch et al.(2014) pTH9237	0.991	0.269
ENSACAG00000014978 M01677_2.00	Anolis carolinensis	NNNNNDRH	DYHNNNNN	PBM Weirauch et al.(2014) pTH9222	0.991	0.269
kmt2cb M01679_2.00	Danio rerio	WWAWAWAT	ATWTWTWW	PBM Weirauch et al.(2014) pTH7876	0.991	0.269
PHF21A M01681_2.00	Meleagris gallopavo	HDNHNNDNHD	HDNHNNDNHD	PBM Weirauch et al.(2014) pTH7875	0.991	0.269
PHF21A M01103_2.00	Monodelphis domestica	NNNAWATWAATN	NATTWATWTNNN	PBM Lambert et al.(2019) pTH9309	0.991	0.269
PHF21A M01682_2.00	Monodelphis domestica	NNNNNHRH	DYDNNNNN	PBM Weirauch et al.(2014) pTH9335	0.991	0.269
Phf21a M01684_2.00	Mus musculus	NNNATATWAATN	NATTWATATNNN	PBM Weirauch et al.(2014) pTH8550	0.991	0.269
athp-3 M01691_2.00	Caenorhabditis elegans	NNDDWDH	DHWHHNN	PBM Weirauch et al.(2014) pTH9097	0.991	0.242
estExt_fgeneshNG_pg.C_820014 M01692_2.00	Naegleria gruberi	NNNNNDRH	DYHNNNNN	PBM Weirauch et al.(2014) pTH9380	0.991	0.231
HMGA M01671_2.00	Arabidopsis thaliana	NNNNDWAWH	DWTWHNNNN	PBM Weirauch et al.(2014) pTH7395	0.991	0.212
HMG-I Y M02652_2.00	Pisum sativum	NDWVAAANRVMRWMAY	RTKWYKBYNTTTBWHN	SELEX Mathelier et al.(2014) MA0045.1	0.991	0.212
NCU01145 M01693_2.00	Neurospora crassa	RWATAWWTNN	NNAWWTATWY	PBM Weirauch et al.(2014) pTH8916	0.991	0.210
hmg-12 M01690_2.00	Caenorhabditis elegans	NNAWWTAWWTNN	NNAWWTAWWTNN	PBM Weirauch et al.(2014) pTH8997	0.991	0.148
SUM1 M01517_2.00	Saccharomyces cerevisiae	NNNDWAWW	WWTWHNNN	PBM Zhu et al.(2009) Sum1	0.991	0.000
For this family, TFs with SR scores > 0.990* will likely have a similar motif*

DNA Binding Domains

Protein ID	Domain	From	To	Sequence
LjSGA_043546.1	AT hook	93	105	KKKRGRPRKYSPD
LjSGA_043546.1	AT hook	134	146	KKHRGRPPGSGKK

Links
Other AT hook family TFs
Other *Lotus japonicus* TFs

1072 Related TFs

Name	Species	Gene ID	Motif Evidence	SR Score	Action
AOL_s00076g81	Arthrobotrys oligospora	AOL_s00076g81	I
AUEXF2481DRAFT_32739	Aureobasidium subglaciale	AUEXF2481DRAFT_32739	I
Bcin01g08840	Botrytis cinerea	Bcin01g08840	I
BDDG_03827	Blastomyces dermatitidis	BDDG_03827	N
CPUR_04901	Claviceps purpurea	CPUR_04901	I
DRE_06603	Drechslerella stenobrocha	DRE_06603	I
ENSCING00000018888	Ciona intestinalis	ENSCING00000018888	N
estExt_fgenesh3_kg.C_40082	Neurospora discreta	estExt_fgenesh3_kg.C_40082	I
estExt_fgeneshMC_pg.C_20910	Mucor circinelloides	estExt_fgeneshMC_pg.C_20910	I
EV44_g2383	Erysiphe necator	EV44_g2383	I
e_gw1.30.104.1	Phycomyces blakesleeanus	e_gw1.30.104.1	N
fgeneshMC_pg.1_#_1771	Mucor circinelloides	fgeneshMC_pg.1_#_1771	I
fgeneshMC_pg.3_#_1190	Mucor circinelloides	fgeneshMC_pg.3_#_1190	I
GMDG_05273	Pseudogymnoascus destructans	GMDG_05273	I
GSTUM_00011974001	Tuber melanosporum	GSTUM_00011974001	I
gw1.72.30.1	Phycomyces blakesleeanus	gw1.72.30.1	I
M437DRAFT_15090	Aureobasidium melanogenum	M437DRAFT_15090	I
M438DRAFT_338286	Aureobasidium pullulans	M438DRAFT_338286	I
M7I_1578	Glarea lozoyensis	M7I_1578	I
MBM_02410	Marssonina brunnea	MBM_02410	I
MELLADRAFT_85039	Melampsora laricipopulina	MELLADRAFT_85039	I
MYCTH_2294934	Myceliophthora thermophila	MYCTH_2294934	I
NCU02819	Neurospora crassa	NCU02819	D
NEUTE1DRAFT_106544	Neurospora tetrasperma	NEUTE1DRAFT_106544	I
OIDMADRAFT_143526	Oidiodendron maius	OIDMADRAFT_143526	I
PAAG_05470	Paracoccidioides sp lutzii	PAAG_05470	N
PABG_05916	Paracoccidioides brasiliensis	PABG_05916	N
PGTG_10028	Puccinia graminis	PGTG_10028	I
PGTG_12120	Puccinia graminis	PGTG_12120	I
PODANS_1_7390	Podospora anserina	PODANS_1_7390	I
PV09_06039	Verruconis gallopava	PV09_06039	N
PVAR5_2976	Byssochlamys spectabilis	PVAR5_2976	N
RO3G_07013	Rhizopus oryzae	RO3G_07013	I
RO3G_07543	Rhizopus oryzae	RO3G_07543	I
RO3G_09728	Rhizopus oryzae	RO3G_09728	I
RO3G_15755	Rhizopus oryzae	RO3G_15755	I
RO3G_16060	Rhizopus oryzae	RO3G_16060	I
SAPIO_CDS3355	Scedosporium apiospermum	SAPIO_CDS3355	I
SBOR_0403	Sclerotinia borealis	SBOR_0403	I
SMAC_00615	Sordaria macrospora	SMAC_00615	I
SS1G_04584	Sclerotinia sclerotiorum	SS1G_04584	I
UCRNP2_5474	Neofusicoccum parvum	UCRNP2_5474	N
V499_08602	Pseudogymnoascus pannorum	V499_08602	I
W97_01424	Coniosporium apollinis	W97_01424	I
W97_04667	Coniosporium apollinis	W97_04667	N

LjSGA_043546.1 (Lotus japonicus) AT hook

TF Information

Directly determined binding motifs

Motifs from related TFs

DNA Binding Domains

Links

1072 Related TFs

LjSGA_043546.1 **(Lotus japonicus)
AT hook**