Bhlhe41 (Mus musculus)
bHLH

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00010 (HLH) IPR001092 ENSMUSG00000030256 T035703_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
Bhlhe41
M01739_2.00		 Mus musculus
NMNCGTGMN
NKCACGNKN		 PBM
Weirauch et al.(2014)
pTH5060		 (Direct) (Direct)

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
BHLHE41
M02782_2.00 		Homo sapiens
NKCACGTGMN
NKCACGTGMN		 SELEX
Jolma et al.(2013)
BHLHB3_1 		0.914 1.000
BHLHE41
M02783_2.00 		Homo sapiens
RKCACGTGAY
RTCACGTGMY		 SELEX
Jolma et al.(2013)
BHLHE41_1 		0.914 0.982
BHLHE41
M04106_2.00 		Homo sapiens
VTCACGTGAB
VTCACGTGAB		 SELEX
Yin et al.(2017)
BHLHE41_eDBD_HT-SELEX 		0.914 0.982
BHLHE41
M09833_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$DEC2_Q2 		0.914 1.000
BHLHE41
M09834_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$DEC2_Q3 		0.914 1.000
BHLHE41
M04107_2.00 		Homo sapiens
RTCACGTGAY
RTCACGTGAY		 SELEX
Yin et al.(2017)
BHLHE41_eDBD_Methyl-HT-SELEX 		0.914 0.982
Bhlhe40
M00119_2.00 		Mus musculus
DCACGTGMN
NKCACGTGH		 PBM
Badis et al.(2009)
Bhlhb2_1274 		0.914 0.964
Bhlhe40
M01738_2.00 		Mus musculus
NCACRNBN
NVNYGTGN		 PBM
Weirauch et al.(2014)
pTH4330 		0.914 0.964
BHLHE40
M02788_2.00 		Homo sapiens
NKCACGTGMH
DKCACGTGMN		 SELEX
Jolma et al.(2013)
BHLHB2_1 		0.914 0.964
Bhlhe40
M02817_2.00 		Mus musculus
NKCACGTGMN
NKCACGTGMN		 SELEX
Jolma et al.(2013)
Bhlhb2_1 		0.914 0.964
Bhlhe40
M02818_2.00 		Mus musculus
NKCACGTGMN
NKCACGTGMN		 SELEX
Jolma et al.(2013)
Bhlhb2_2 		0.914 0.964
BHLHE40
M04126_2.00 		Homo sapiens
VTCACGTGAB
VTCACGTGAB		 SELEX
Yin et al.(2017)
BHLHE40_eDBD_HT-SELEX 		0.914 0.981
BHLHE40
M07798_2.00 		Homo sapiens
DCACGTGMSN
NSKCACGTGH		 ChIP-seq
Gerstein et al.(2012)
HepG2_BHLHE40_HudsonAlpha 		0.914 0.981
BHLHE40
M08726_2.00 		Homo sapiens
DDCACGTGMS
SKCACGTGHH		 Misc
Kulakovskiy et al.(2013)
BHE40_HUMAN.H11MO.0.A 		0.914 0.981
Bhlhe40
M08761_2.00 		Mus musculus
DCACGTGMS
SKCACGTGH		 Misc
Kulakovskiy et al.(2013)
BHE40_MOUSE.H11MO.0.A 		0.914 0.981
BHLHE40
M09456_2.00 		Homo sapiens
DCACGTGMNN
NNKCACGTGH		 Misc
Heinz et al.(2010)
HepG2-BHLHE40_GSE31477 		0.914 0.981
BHLHE40
M09842_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$BHLHE40_03 		0.914 0.981
BHLHE40
M09843_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$DEC1_Q2 		0.914 0.981
BHLHE40
M09844_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$DEC1_Q3 		0.914 0.981
BHLHE40
M09845_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$STRA13_01 		0.914 0.981
BHLHE40
M04127_2.00 		Homo sapiens
RTCACGTGAY
RTCACGTGAY		 SELEX
Yin et al.(2017)
BHLHE40_eDBD_Methyl-HT-SELEX 		0.914 0.981
For this family, TFs with SR scores > 0.838 will likely have a similar motif

Experimental Constructs

Motif ID Domain From To Sequence
M01739_2.00 bHLH 16 70

DNA Binding Domains

Protein ID Domain From To Sequence
ENSMUSP00000032386 bHLH 46 100
ENSMUSP00000107332 bHLH 45 100

Links

Other bHLH family TFs
Other Mus musculus TFs

118 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
28609.m000209 Ricinus communis 28609.m000209 N 0.000
AC216731.3_FG001 Zea mays AC216731.3_FG001 N 0.000
AMTR_s00024p00250370 Amborella trichopoda AMTR_s00024p00250370 N 0.000
Aquca_041_00164 Aquilegia coerulea Aquca_041_00164 N 0.000
BGIOSGA002533 Oryza indica BGIOSGA002533 N 0.000
BGIOSGA008903 Oryza indica BGIOSGA008903 N 0.000
BHLH83 Arabidopsis thaliana AT1G66470 N 0.000
BHLH86 Arabidopsis thaliana AT5G37800 N 0.000
Bo00835s050 Brassica oleracea Bo00835s050 N 0.000
Bo6g101000 Brassica oleracea Bo6g101000 N 0.000
Bostr.26959s0271 Boechera stricta Bostr.26959s0271 N 0.000
Bostr.9638s0100 Boechera stricta Bostr.9638s0100 N 0.000
Bra019708 Brassica rapa Bra019708 N 0.000
BRADI1G42440 Brachypodium distachyon BRADI1G42440 N 0.000
BRADI2G01000 Brachypodium distachyon BRADI2G01000 N 0.000
BRADI3G53060 Brachypodium distachyon BRADI3G53060 N 0.000
Cagra.2629s0001 Capsella grandiflora Cagra.2629s0001 N 0.000
Cagra.8123s0001 Capsella grandiflora Cagra.8123s0001 N 0.000
Carubv10007389m.g Capsella rubella Carubv10007389m.g N 0.000
Carubv10021322m.g Capsella rubella Carubv10021322m.g N 0.000
cassava10199.m1 Manihot esculenta cassava10199.m1 N 0.000
Ca_16136 Cicer arietinum Ca_16136 N 0.000
Ciclev10013420m.g Citrus clementina Ciclev10013420m.g N 0.000
Cla020067 Citrullus lanatus Cla020067 N 0.000
Cucsa.006340 Cucumis sativus Cucsa.006340 N 0.000
estExt_fgenesh1_pg.C_1470079 Physcomitrella patens estExt_fgenesh1_pg.C_1470079 N 0.000
estExt_fgenesh1_pg.C_840011 Physcomitrella patens estExt_fgenesh1_pg.C_840011 N 0.000
Eucgr.F02831 Eucalyptus grandis Eucgr.F02831 N 0.000
evm.TU.contig_27490 Carica papaya evm.TU.contig_27490 N 0.000
F775_02947 Aegilops tauschii F775_02947 N 0.000
F775_03185 Aegilops tauschii F775_03185 N 0.000
F775_23458 Aegilops tauschii F775_23458 N 0.000
F775_25020 Aegilops tauschii F775_25020 N 0.000
F775_43492 Aegilops tauschii F775_43492 N 0.000
gene17937-v1.0-hybrid Fragaria vesca gene17937-v1.0-hybrid N 0.000
GLYMA02G41370 Glycine max GLYMA02G41370 N 0.000
GLYMA11G33840 Glycine max GLYMA11G33840 N 0.000
GLYMA14G07590 Glycine max GLYMA14G07590 N 0.000
GLYMA18G04420 Glycine max GLYMA18G04420 N 0.000
Gorai.001G086800 Gossypium raimondii Gorai.001G086800 N 0.000
Gorai.004G064400 Gossypium raimondii Gorai.004G064400 N 0.000
GRMZM2G066057 Zea mays GRMZM2G066057 N 0.000
GSMUA_Achr10G20230_001 Musa acuminata GSMUA_Achr10G20230_001 N 0.000
GSMUA_Achr2G22860_001 Musa acuminata GSMUA_Achr2G22860_001 N 0.000
GSMUA_Achr3G01250_001 Musa acuminata GSMUA_Achr3G01250_001 N 0.000
GSMUA_Achr6G09370_001 Musa acuminata GSMUA_Achr6G09370_001 N 0.000
LPERR01G00690 Leersia perrieri LPERR01G00690 N 0.000
LPERR02G24230 Leersia perrieri LPERR02G24230 N 0.000
Lus10017634.g Linum usitatissimum Lus10017634.g N 0.000
Lus10033592.g Linum usitatissimum Lus10033592.g N 0.000
MDP0000435722 Malus domestica MDP0000435722 N 0.000
mgf025678m Mimulus guttatus mgf025678m N 0.000
MLOC_37511 Hordeum vulgare MLOC_37511 N 0.000
MTR_5g079500 Medicago truncatula MTR_5g079500 N 0.000
OB0081G10010 Oryza brachyantha OB0081G10010 N 0.000
OB01G10850 Oryza brachyantha OB01G10850 N 0.000
OB02G36990 Oryza brachyantha OB02G36990 N 0.000
OBART01G00850 Oryza barthii OBART01G00850 N 0.000
OBART02G29800 Oryza barthii OBART02G29800 N 0.000
OGLUM01G00830 Oryza glumaepatula OGLUM01G00830 N 0.000
OGLUM02G30450 Oryza glumaepatula OGLUM02G30450 N 0.000
OLONG_010619 Oryza longistaminata OLONG_010619 N 0.000
OMERI01G00290 Oryza meridionalis OMERI01G00290 N 0.000
OMERI02G28660 Oryza meridionalis OMERI02G28660 N 0.000
ONIVA01G00780 Oryza nivara ONIVA01G00780 N 0.000
ONIVA02G32560 Oryza nivara ONIVA02G32560 N 0.000
OPUNC01G00700 Oryza punctata OPUNC01G00700 N 0.000
OPUNC02G27370 Oryza punctata OPUNC02G27370 N 0.000
orange1.1g038918m.g Citrus sinensis orange1.1g038918m.g N 0.000
ORGLA01G0007400 Oryza glaberrima ORGLA01G0007400 N 0.000
ORGLA02G0253300 Oryza glaberrima ORGLA02G0253300 N 0.000
ORUFI01G00830 Oryza rufipogon ORUFI01G00830 N 0.000
ORUFI02G31420 Oryza rufipogon ORUFI02G31420 N 0.000
OS01G0111500 Oryza sativa OS01G0111500 N 0.000
OS02G0710300 Oryza sativa OS02G0710300 N 0.000
Pavir.Aa00611 Panicum virgatum Pavir.Aa00611 N 0.000
Pavir.Db01008 Panicum virgatum Pavir.Db01008 N 0.000
Pavir.J04215 Panicum virgatum Pavir.J04215 N 0.000
Pavir.J20533 Panicum virgatum Pavir.J20533 N 0.000
PGSC0003DMG400030650 Solanum tuberosum PGSC0003DMG400030650 N 0.000
Pm014359 Prunus mume Pm014359 N 0.000
POPTR_0004s08770 Populus trichocarpa POPTR_0004s08770 N 0.000
POPTR_0005s14360 Populus trichocarpa POPTR_0005s14360 N 0.000
PRUPE_ppa025775mg Prunus persica PRUPE_ppa025775mg N 0.000
RHD6 Arabidopsis lyrata scaffold_201372.1 N 0.000
RSL1 Arabidopsis lyrata fgenesh2_kg.7__3192__AT5G37800.1 N 0.000
SapurV1A.0102s0280 Salix purpurea SapurV1A.0102s0280 N 0.000
SapurV1A.0230s0340 Salix purpurea SapurV1A.0230s0340 N 0.000
Sb03g008290 Sorghum bicolor Sb03g008290 N 0.000
Sb04g030230 Sorghum bicolor Sb04g030230 N 0.000
SELMODRAFT_409967 Selaginella moellendorffii SELMODRAFT_409967 N 0.000
SELMODRAFT_413232 Selaginella moellendorffii SELMODRAFT_413232 N 0.000
SELMODRAFT_414414 Selaginella moellendorffii SELMODRAFT_414414 N 0.000
SELMODRAFT_418491 Selaginella moellendorffii SELMODRAFT_418491 N 0.000
SELMODRAFT_423809 Selaginella moellendorffii SELMODRAFT_423809 N 0.000
SELMODRAFT_426794 Selaginella moellendorffii SELMODRAFT_426794 N 0.000
Si004720m.g Setaria italica Si004720m.g N 0.000
Si019575m.g Setaria italica Si019575m.g N 0.000
Solyc02g091440.1 Solanum lycopersicum Solyc02g091440.1 N 0.000
TCM_019210 Theobroma cacao TCM_019210 N 0.000
Thhalv10018927m.g Eutrema salsugineum Thhalv10018927m.g N 0.000
Thhalv10028239m.g Eutrema salsugineum Thhalv10028239m.g N 0.000
TRAES3BF060500180CFD_g Triticum aestivum TRAES3BF060500180CFD_g N 0.000
Traes_3AS_0D78930B4 Triticum aestivum Traes_3AS_0D78930B4 N 0.000
Traes_6BL_9B25E6A10 Triticum aestivum Traes_6BL_9B25E6A10 N 0.000
Traes_6BL_A964BE52B Triticum aestivum Traes_6BL_A964BE52B N 0.000
Traes_6DL_3DCFAB31F Triticum aestivum Traes_6DL_3DCFAB31F N 0.000
Traes_7BS_A0A8B25DF Triticum aestivum Traes_7BS_A0A8B25DF N 0.000
Traes_7DS_4053B6E88 Triticum aestivum Traes_7DS_4053B6E88 N 0.000
TRIUR3_11692 Triticum urartu TRIUR3_11692 N 0.000
TRIUR3_14379 Triticum urartu TRIUR3_14379 N 0.000
TRIUR3_27166 Triticum urartu TRIUR3_27166 N 0.000
VIT_14s0006g01470 Vitis vinifera VIT_14s0006g01470 N 0.000