fgenesh2_pg.scaffold_792000016 (Branchiostoma floridae)
bHLH

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00010 (HLH) IPR001092 fgenesh2_pg.scaffold_792000016 T048607_2.00 JGI (2012-Mar-17)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
Arntl
M01751_2.00 		Mus musculus
NCACGTGAYN
NRTCACGTGN		 PBM
Weirauch et al.(2014)
pTH5064 		0.879 0.796
ARNTL
M02787_2.00 		Homo sapiens
GTCACGTGAC
GTCACGTGAC		 SELEX
Jolma et al.(2013)
ARNTL_1 		0.879 0.796
ARNTL
M04124_2.00 		Homo sapiens
RDCACGTGHN
NDCACGTGHY		 SELEX
Yin et al.(2017)
ARNTL_eDBD_HT-SELEX 		0.879 0.796
ARNTL
M08725_2.00 		Homo sapiens
NVDCACGTGBN
NVCACGTGHBN		 Misc
Kulakovskiy et al.(2013)
BMAL1_HUMAN.H11MO.0.A 		0.879 0.796
Arntl
M08776_2.00 		Mus musculus
VCACGTGMN
NKCACGTGB		 Misc
Kulakovskiy et al.(2013)
BMAL1_MOUSE.H11MO.0.A 		0.879 0.796
Arntl
M09478_2.00 		Mus musculus
CACGTGNN
NNCACGTG		 Misc
Heinz et al.(2010)
Liver-Bmal1_GSE39860 		0.879 0.796
Arntl
M09889_2.00 		Rattus norvegicus Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$BMAL1_01 		0.879 0.796
ARNTL
M09841_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$BMAL1_Q6 		0.879 0.796
ARNTL
M04125_2.00 		Homo sapiens
NDCACRTGHY
RDCAYGTGHN		 SELEX
Yin et al.(2017)
ARNTL_eDBD_Methyl-HT-SELEX 		0.879 0.796
For this family, TFs with SR scores > 0.838 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
fgenesh2_pg.scaffold_792000016 bHLH 89 142

Links

Other bHLH family TFs
Other Branchiostoma floridae TFs

79 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
AMTR_s00057p00206030 Amborella trichopoda AMTR_s00057p00206030 N 0.000
Aquca_017_00223 Aquilegia coerulea Aquca_017_00223 N 0.000
BGIOSGA005119 Oryza indica BGIOSGA005119 N 0.000
cassava29582.valid.m1 Manihot esculenta cassava29582.valid.m1 N 0.000
cassava29583.valid.m1 Manihot esculenta cassava29583.valid.m1 N 0.000
Ciclev10018617m.g Citrus clementina Ciclev10018617m.g N 0.000
GSMUA_Achr1G11230_001 Musa acuminata GSMUA_Achr1G11230_001 N 0.000
LD Vitis vinifera VIT_07s0104g01580 N 0.000
LPERR01G37480 Leersia perrieri LPERR01G37480 N 0.000
OB01G52060 Oryza brachyantha OB01G52060 N 0.000
OBART01G43050 Oryza barthii OBART01G43050 N 0.000
OGLUM01G47350 Oryza glumaepatula OGLUM01G47350 N 0.000
OLONG_017231 Oryza longistaminata OLONG_017231 N 0.000
ONIVA01G48990 Oryza nivara ONIVA01G48990 N 0.000
OPUNC01G42000 Oryza punctata OPUNC01G42000 N 0.000
orange1.1g001425m.g Citrus sinensis orange1.1g001425m.g N 0.000
ORGLA01G0367900 Oryza glaberrima ORGLA01G0367900 N 0.000
ORUFI01G46480 Oryza rufipogon ORUFI01G46480 N 0.000
OS01G0934300 Oryza sativa OS01G0934300 N 0.000
PDK_20s1602441g001 Phoenix dactylifera PDK_20s1602441g001 N 0.000
PK02496.1 Cannabis sativa PK02496.1 N 0.000
POPTR_0002s20990 Populus trichocarpa POPTR_0002s20990 N 0.000
POPTR_0014s12730 Populus trichocarpa POPTR_0014s12730 N 0.000
SapurV1A.0155s0080 Salix purpurea SapurV1A.0155s0080 N 0.000
Solyc09g074690.2 Solanum lycopersicum Solyc09g074690.2 N 0.000
TCM_004566 Theobroma cacao TCM_004566 N 0.000
Traes_3B_3142C10C9 Triticum aestivum Traes_3B_3142C10C9 N 0.000
Traes_3DL_D4FBDA9DC Triticum aestivum Traes_3DL_D4FBDA9DC N 0.000
TRIUR3_34541 Triticum urartu TRIUR3_34541 N 0.000