estExt_fgenesh1_pg.C_100270 (Coccomyxa subellipsoidea C169)
bHLH

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00010 (HLH) IPR001092 estExt_fgenesh1_pg.C_100270 T049574_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
PIF5
M08047_2.00 		Arabidopsis thaliana
YCACRTGS
SCAYGTGR		 ChIP-seq
Mathelier et al.(2014)
MA0562.1 		0.851 0.469
PIF5
M09452_2.00 		Arabidopsis thaliana
NNBCAYGTGV
BCACRTGVNN		 Misc
Heinz et al.(2010)
Arabidopsis-PIF5ox_GSE35062 		0.851 0.469
For this family, TFs with SR scores > 0.838 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
47901 bHLH 112 160

Links

Other bHLH family TFs
Other Coccomyxa subellipsoidea C169 TFs

17 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
28718.m000038 Ricinus communis 28718.m000038 I 0.000
30170.m013843 Ricinus communis 30170.m013843 I 0.000
AMTR_s00051p00204250 Amborella trichopoda AMTR_s00051p00204250 I 0.000
Aquca_007_00717 Aquilegia coerulea Aquca_007_00717 I 0.000
Aquca_010_00625 Aquilegia coerulea Aquca_010_00625 I 0.000
BGIOSGA014220 Oryza indica BGIOSGA014220 I 0.000
BGIOSGA014221 Oryza indica BGIOSGA014221 I 0.000
BGIOSGA022380 Oryza indica BGIOSGA022380 I 0.000
Bo1g004940 Brassica oleracea Bo1g004940 I 0.000
Bo4g151460 Brassica oleracea Bo4g151460 I 0.000
Bo7g063980 Brassica oleracea Bo7g063980 I 0.000
Bo7g118430 Brassica oleracea Bo7g118430 I 0.000
Bo8g079660 Brassica oleracea Bo8g079660 I 0.000
Bo9g020380 Brassica oleracea Bo9g020380 I 0.000
Bostr.0568s0141 Boechera stricta Bostr.0568s0141 I 0.000
Bostr.12302s0138 Boechera stricta Bostr.12302s0138 I 0.000
Bostr.27895s0153 Boechera stricta Bostr.27895s0153 I 0.000
Bostr.3877s0058 Boechera stricta Bostr.3877s0058 I 0.000
Bostr.6864s0220 Boechera stricta Bostr.6864s0220 I 0.000
Bostr.7867s1581 Boechera stricta Bostr.7867s1581 I 0.000
Bra011744 Brassica rapa Bra011744 I 0.000
Bra012140 Brassica rapa Bra012140 I 0.000
Bra014056 Brassica rapa Bra014056 I 0.000
Bra017811 Brassica rapa Bra017811 I 0.000
Bra032173 Brassica rapa Bra032173 I 0.000
Bra036061 Brassica rapa Bra036061 I 0.000
Bra037124 Brassica rapa Bra037124 I 0.000
BRADI1G48320 Brachypodium distachyon BRADI1G48320 I 0.000
BRADI5G24110 Brachypodium distachyon BRADI5G24110 I 0.000
Cagra.0342s0005 Capsella grandiflora Cagra.0342s0005 I 0.000
Cagra.0706s0004 Capsella grandiflora Cagra.0706s0004 I 0.000
Cagra.1735s0005 Capsella grandiflora Cagra.1735s0005 I 0.000
Cagra.29993s0001 Capsella grandiflora Cagra.29993s0001 I 0.000
Cagra.4909s0050 Capsella grandiflora Cagra.4909s0050 I 0.000
Carubv10005767m.g Capsella rubella Carubv10005767m.g I 0.000
Carubv10010891m.g Capsella rubella Carubv10010891m.g I 0.000
Carubv10018162m.g Capsella rubella Carubv10018162m.g I 0.000
Carubv10024198m.g Capsella rubella Carubv10024198m.g I 0.000
Carubv10027999m.g Capsella rubella Carubv10027999m.g I 0.000
cassava17493.valid.m1 Manihot esculenta cassava17493.valid.m1 I 0.000
cassava47353.m1 Manihot esculenta cassava47353.m1 I 0.000
cassava9153.m1 Manihot esculenta cassava9153.m1 I 0.000
Ca_01556 Cicer arietinum Ca_01556 I 0.000
Ca_02170 Cicer arietinum Ca_02170 I 0.000
CEJ1 Arabidopsis lyrata fgenesh2_kg.5__1372__AT3G50260.1 I 0.000
Ciclev10002733m.g Citrus clementina Ciclev10002733m.g I 0.000
Cla014175 Citrullus lanatus Cla014175 I 0.000
Cla020550 Citrullus lanatus Cla020550 I 0.000
Cla020961 Citrullus lanatus Cla020961 I 0.000
Cla022937 Citrullus lanatus Cla022937 I 0.000
Cucsa.102560 Cucumis sativus Cucsa.102560 I 0.000
Cucsa.352470 Cucumis sativus Cucsa.352470 I 0.000
Cucsa.367300 Cucumis sativus Cucsa.367300 I 0.000
Cucsa.395960 Cucumis sativus Cucsa.395960 I 0.000
DEAR2 Arabidopsis lyrata scaffold_803390.1 I 0.000
DEAR3 Arabidopsis lyrata fgenesh2_kg.4__264__AT2G23340.1 I 0.000
ERF008 Arabidopsis thaliana AT2G23340 D 0.000
ERF010 Arabidopsis thaliana AT5G67190 D 0.000
ERF011 Arabidopsis thaliana AT3G50260 D 0.000
Eucgr.F00192 Eucalyptus grandis Eucgr.F00192 I 0.000
Eucgr.F02317 Eucalyptus grandis Eucgr.F02317 I 0.000
Eucgr.F02319 Eucalyptus grandis Eucgr.F02319 I 0.000
Eucgr.H02094 Eucalyptus grandis Eucgr.H02094 I 0.000
gene09137-v1.0-hybrid Fragaria vesca gene09137-v1.0-hybrid I 0.000
gene23873-v1.0-hybrid Fragaria vesca gene23873-v1.0-hybrid I 0.000
GLYMA01G39540 Glycine max GLYMA01G39540 I 0.000
GLYMA04G04355 Glycine max GLYMA04G04355 I 0.000
GLYMA05G19050 Glycine max GLYMA05G19050 I 0.000
GLYMA06G04490 Glycine max GLYMA06G04490 I 0.000
GLYMA11G05700 Glycine max GLYMA11G05700 I 0.000
GLYMA14G09320 Glycine max GLYMA14G09320 I 0.000
GLYMA17G18580 Glycine max GLYMA17G18580 I 0.000
GLYMA17G35860 Glycine max GLYMA17G35860 I 0.000
Gorai.003G026100 Gossypium raimondii Gorai.003G026100 I 0.000
Gorai.003G099700 Gossypium raimondii Gorai.003G099700 I 0.000
Gorai.008G077900 Gossypium raimondii Gorai.008G077900 I 0.000
Gorai.009G214300 Gossypium raimondii Gorai.009G214300 I 0.000
Gorai.010G021900 Gossypium raimondii Gorai.010G021900 I 0.000
GRMZM2G119865 Zea mays GRMZM2G119865 I 0.000
GRMZM2G174917 Zea mays GRMZM2G174917 I 0.000
GRMZM2G301860 Zea mays GRMZM2G301860 I 0.000
GRMZM2G421033 Zea mays GRMZM2G421033 I 0.000
GSMUA_Achr3G13190_001 Musa acuminata GSMUA_Achr3G13190_001 I 0.000
GSMUA_Achr4G20280_001 Musa acuminata GSMUA_Achr4G20280_001 I 0.000
GSMUA_Achr5G22190_001 Musa acuminata GSMUA_Achr5G22190_001 I 0.000
GSMUA_Achr7G05410_001 Musa acuminata GSMUA_Achr7G05410_001 I 0.000
GSMUA_Achr7G20800_001 Musa acuminata GSMUA_Achr7G20800_001 I 0.000
GSMUA_Achr8G15640_001 Musa acuminata GSMUA_Achr8G15640_001 I 0.000
GSMUA_Achr9G11310_001 Musa acuminata GSMUA_Achr9G11310_001 I 0.000
GSMUA_AchrUn_randomG12040_001 Musa acuminata GSMUA_AchrUn_randomG12040_001 I 0.000
GSMUA_AchrUn_randomG26940_001 Musa acuminata GSMUA_AchrUn_randomG26940_001 I 0.000
LjSGA_004289.2 Lotus japonicus LjSGA_004289.2 I 0.000
LjSGA_007705.1 Lotus japonicus LjSGA_007705.1 I 0.000
LjSGA_134387.1 Lotus japonicus LjSGA_134387.1 I 0.000
LPERR04G23120 Leersia perrieri LPERR04G23120 I 0.000
LPERR06G04000 Leersia perrieri LPERR06G04000 I 0.000
Lus10009373.g Linum usitatissimum Lus10009373.g I 0.000
Lus10010043.g Linum usitatissimum Lus10010043.g I 0.000
Lus10018727.g Linum usitatissimum Lus10018727.g I 0.000
MDP0000125673 Malus domestica MDP0000125673 I 0.000
MDP0000179962 Malus domestica MDP0000179962 I 0.000
MDP0000756341 Malus domestica MDP0000756341 I 0.000
mgf000289m Mimulus guttatus mgf000289m I 0.000
mgf006561m Mimulus guttatus mgf006561m I 0.000
mgf021115m Mimulus guttatus mgf021115m I 0.000
mgf025363m Mimulus guttatus mgf025363m I 0.000
MLOC_81350 Hordeum vulgare MLOC_81350 I 0.000
MTR_1g019110 Medicago truncatula MTR_1g019110 I 0.000
MTR_3g102100 Medicago truncatula MTR_3g102100 I 0.000
MTR_5g016750 Medicago truncatula MTR_5g016750 I 0.000
OBART06G04460 Oryza barthii OBART06G04460 I 0.000
OGLUM04G27370 Oryza glumaepatula OGLUM04G27370 I 0.000
OGLUM06G04560 Oryza glumaepatula OGLUM06G04560 I 0.000
OMERI04G22870 Oryza meridionalis OMERI04G22870 I 0.000
ONIVA04G25910 Oryza nivara ONIVA04G25910 I 0.000
ONIVA06G05630 Oryza nivara ONIVA06G05630 I 0.000
OPUNC06G04240 Oryza punctata OPUNC06G04240 I 0.000
orange1.1g031669m.g Citrus sinensis orange1.1g031669m.g I 0.000
orange1.1g041516m.g Citrus sinensis orange1.1g041516m.g I 0.000
ORGLA04G0237600 Oryza glaberrima ORGLA04G0237600 I 0.000
ORGLA06G0041000 Oryza glaberrima ORGLA06G0041000 I 0.000
ORUFI06G04420 Oryza rufipogon ORUFI06G04420 I 0.000
OS04G0648900 Oryza sativa OS04G0648900 I 0.000
OS06G0166400 Oryza sativa OS06G0166400 I 0.000
Pavir.J04844 Panicum virgatum Pavir.J04844 I 0.000
Pavir.J20437 Panicum virgatum Pavir.J20437 I 0.000
Pavir.J27349 Panicum virgatum Pavir.J27349 I 0.000
Pavir.J34361 Panicum virgatum Pavir.J34361 I 0.000
PGSC0003DMG400004005 Solanum tuberosum PGSC0003DMG400004005 I 0.000
PGSC0003DMG400007951 Solanum tuberosum PGSC0003DMG400007951 I 0.000
PGSC0003DMG400034101 Solanum tuberosum PGSC0003DMG400034101 I 0.000
PK15612.1 Cannabis sativa PK15612.1 I 0.000
POPTR_0002s12550 Populus trichocarpa POPTR_0002s12550 I 0.000
POPTR_0005s18430 Populus trichocarpa POPTR_0005s18430 I 0.000
POPTR_0007s10750 Populus trichocarpa POPTR_0007s10750 I 0.000
POPTR_0014s02530 Populus trichocarpa POPTR_0014s02530 I 0.000
PRUPE_ppa012302mg Prunus persica PRUPE_ppa012302mg I 0.000
PRUPE_ppa012516mg Prunus persica PRUPE_ppa012516mg I 0.000
RAP2-1 Arabidopsis thaliana AT1G46768 D 0.000
RAP2-10 Arabidopsis thaliana AT4G36900 D 0.000
RAP2-9 Arabidopsis thaliana AT4G06746 D 0.000
RAP2.1 Arabidopsis lyrata scaffold_104275.1 I 0.000
RAP2.10 Arabidopsis lyrata scaffold_700370.1 I 0.000
RAP2.9 Arabidopsis lyrata fgenesh2_kg.6__2823__AT4G06746.1 I 0.000
SapurV1A.0167s0190 Salix purpurea SapurV1A.0167s0190 I 0.000
SapurV1A.0423s0180 Salix purpurea SapurV1A.0423s0180 I 0.000
SapurV1A.0689s0100 Salix purpurea SapurV1A.0689s0100 I 0.000
SapurV1A.1340s0030 Salix purpurea SapurV1A.1340s0030 I 0.000
SapurV1A.1616s0040 Salix purpurea SapurV1A.1616s0040 I 0.000
SapurV1A.2355s0030 Salix purpurea SapurV1A.2355s0030 I 0.000
Sb06g030660 Sorghum bicolor Sb06g030660 I 0.000
Sb10g004580 Sorghum bicolor Sb10g004580 I 0.000
Solyc04g078640.1 Solanum lycopersicum Solyc04g078640.1 I 0.000
TCM_000669 Theobroma cacao TCM_000669 I 0.000
TCM_033791 Theobroma cacao TCM_033791 I 0.000
Thhalv10000354m.g Eutrema salsugineum Thhalv10000354m.g I 0.000
Thhalv10004985m.g Eutrema salsugineum Thhalv10004985m.g I 0.000
Thhalv10026288m.g Eutrema salsugineum Thhalv10026288m.g I 0.000
Thhalv10029052m.g Eutrema salsugineum Thhalv10029052m.g I 0.000
Traes_2BL_1E57B73B21 Triticum aestivum Traes_2BL_1E57B73B21 I 0.000
VIT_07s0031g00190 Vitis vinifera VIT_07s0031g00190 I 0.000
VIT_18s0001g10150 Vitis vinifera VIT_18s0001g10150 I 0.000