CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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LDEC012244
(
Leptinotarsa decemlineata
)
bHLH
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00010 (HLH)
IPR001092
LDEC012244
T051518_2.00
Misc (2018-Jan-19)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
Fer3
M05993_2.00
Drosophila melanogaster
GKVACAGVTG
CABCTGTBMC
B1H
Zhu et al.(2011)
Fer3_da_SANGER_5_FBgn0037937
0.890
0.962
FERD3L
M04140_2.00
Homo sapiens
GYVACAGCTGKYRC
GYRMCAGCTGTBRC
SELEX
Yin et al.(2017)
FERD3L_FL_HT-SELEX_1
0.890
0.904
FERD3L
M04141_2.00
Homo sapiens
GTRMCAKMTGKYRC
GYRMCAKMTGKYAC
SELEX
Yin et al.(2017)
FERD3L_FL_HT-SELEX_2
0.890
0.904
FERD3L
M04142_2.00
Homo sapiens
GTVACAGCTGKYRC
GYRMCAGCTGTBAC
SELEX
Yin et al.(2017)
FERD3L_FL_Methyl-HT-SELEX_1
0.890
0.904
FERD3L
M04143_2.00
Homo sapiens
GTRMCAKMTGKYRC
GYRMCAKMTGKYAC
SELEX
Yin et al.(2017)
FERD3L_FL_Methyl-HT-SELEX_2
0.890
0.904
For this family, TFs with SR scores >
0.838
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
LDEC012244-PA
bHLH
109
161
QRRAANIRERRRMFNLNEAFDKLRRKVPTFAYEKRLSRIETLRLAITYISFMS
Links
Other
bHLH
family TFs
Other
Leptinotarsa decemlineata
TFs
122 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
AGL76
Arabidopsis thaliana
AT5G40120
I
0.000
AGL77
Arabidopsis thaliana
AT5G38740
I
0.000
AGL78
Arabidopsis thaliana
AT5G65330
D
0.000
AGL81
Arabidopsis thaliana
AT5G39750
I
0.000
Al_scaffold_0007_3741
Arabidopsis lyrata
Al_scaffold_0007_3741
I
0.000
Bostr.0568s0255
Boechera stricta
Bostr.0568s0255
I
0.000
Bostr.3751s0030
Boechera stricta
Bostr.3751s0030
I
0.000
Carubv10006654m.g
Capsella rubella
Carubv10006654m.g
I
0.000
Carubv10007456m.g
Capsella rubella
Carubv10007456m.g
I
0.000
Carubv10007591m.g
Capsella rubella
Carubv10007591m.g
I
0.000
fgenesh2_kg.8__2584__AT5G65330.1
Arabidopsis lyrata
fgenesh2_kg.8__2584__AT5G65330.1
I
0.000
scaffold_704060.1
Arabidopsis lyrata
scaffold_704060.1
I
0.000