chr1.CM0544.580.nd (Lotus japonicus)
bHLH

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00010 (HLH) IPR001092 chr1.CM0544.580.nd T052013_2.00 Superfamily (2010-Oct-26)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No TFs with similar DNA binding domains

DNA Binding Domains

Protein ID Domain From To Sequence
chr1.CM0544.580.nd bHLH 129 180

Links

Other bHLH family TFs
Other Lotus japonicus TFs

442 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
29844.m003312 Ricinus communis 29844.m003312 N
29904.m002956 Ricinus communis 29904.m002956 N 0.880
30054.m000819 Ricinus communis 30054.m000819 N 0.910
30128.m008737 Ricinus communis 30128.m008737 N 0.913
30169.m006534 Ricinus communis 30169.m006534 N 0.845
AMTR_s00015p00239460 Amborella trichopoda AMTR_s00015p00239460 N 0.845
AMTR_s00089p00043950 Amborella trichopoda AMTR_s00089p00043950 N 0.880
Aquca_005_00478 Aquilegia coerulea Aquca_005_00478 N 0.913
Aquca_034_00130 Aquilegia coerulea Aquca_034_00130 N 0.880
Aquca_037_00084 Aquilegia coerulea Aquca_037_00084 N 0.845
Aquca_135_00008 Aquilegia coerulea Aquca_135_00008 N
AT1G22490 Arabidopsis thaliana AT1G22490 N 0.883
BGIOSGA006748 Oryza indica BGIOSGA006748 N 0.845
BGIOSGA023024 Oryza indica BGIOSGA023024 N 0.845
BGIOSGA030936 Oryza indica BGIOSGA030936 N 0.883
BHLH96 Arabidopsis thaliana AT1G72210 N 0.883
Bo1g101110 Brassica oleracea Bo1g101110 N 0.880
Bo1g150080 Brassica oleracea Bo1g150080 N
Bo2g046020 Brassica oleracea Bo2g046020 N 0.845
Bo3g022850 Brassica oleracea Bo3g022850 N 0.845
Bo3g060420 Brassica oleracea Bo3g060420 N
Bo3g082010 Brassica oleracea Bo3g082010 N 0.880
Bo5g038570 Brassica oleracea Bo5g038570 N 0.883
Bo5g144750 Brassica oleracea Bo5g144750 N
Bo6g092570 Brassica oleracea Bo6g092570 N 0.883
Bo6g114730 Brassica oleracea Bo6g114730 N 0.859
Bo7g037540 Brassica oleracea Bo7g037540 N 0.880
Bo7g057920 Brassica oleracea Bo7g057920 N 0.883
Bo8g071490 Brassica oleracea Bo8g071490 N 0.883
Bo9g110960 Brassica oleracea Bo9g110960 N 0.845
Bostr.10273s0131 Boechera stricta Bostr.10273s0131 N 0.883
Bostr.12659s0103 Boechera stricta Bostr.12659s0103 N 0.883
Bostr.19424s0222 Boechera stricta Bostr.19424s0222 N 0.880
Bostr.2570s0048 Boechera stricta Bostr.2570s0048 N 0.854
Bostr.26833s0957 Boechera stricta Bostr.26833s0957 N 0.845
Bra001183 Brassica rapa Bra001183 N
Bra001929 Brassica rapa Bra001929 N 0.880
Bra003073 Brassica rapa Bra003073 N 0.845
Bra003886 Brassica rapa Bra003886 N 0.883
Bra012329 Brassica rapa Bra012329 N 0.883
Bra016080 Brassica rapa Bra016080 N 0.883
Bra016377 Brassica rapa Bra016377 N 0.883
Bra020775 Brassica rapa Bra020775 N
Bra022638 Brassica rapa Bra022638 N 0.845
Bra028357 Brassica rapa Bra028357 N 0.880
Bra029088 Brassica rapa Bra029088 N 0.845
Bra040234 Brassica rapa Bra040234 N
Bra040856 Brassica rapa Bra040856 N 0.883
BRADI1G38650 Brachypodium distachyon BRADI1G38650 N 0.845
BRADI3G09670 Brachypodium distachyon BRADI3G09670 N 0.845
Cagra.0026s0026 Capsella grandiflora Cagra.0026s0026 N 0.880
Cagra.0084s0068 Capsella grandiflora Cagra.0084s0068 N 0.845
Cagra.0114s0053 Capsella grandiflora Cagra.0114s0053 N 0.883
Cagra.1772s0035 Capsella grandiflora Cagra.1772s0035 N
Cagra.4006s0007 Capsella grandiflora Cagra.4006s0007 N 0.883
Carubv10011476m.g Capsella rubella Carubv10011476m.g N 0.883
Carubv10012751m.g Capsella rubella Carubv10012751m.g N
Carubv10013821m.g Capsella rubella Carubv10013821m.g N 0.880
Carubv10020657m.g Capsella rubella Carubv10020657m.g N 0.883
Carubv10026630m.g Capsella rubella Carubv10026630m.g N 0.845
cassava11522.m1 Manihot esculenta cassava11522.m1 N
cassava13431.valid.m1 Manihot esculenta cassava13431.valid.m1 N 0.913
cassava19507.valid.m1 Manihot esculenta cassava19507.valid.m1 N 0.913
cassava22781.valid.m1 Manihot esculenta cassava22781.valid.m1 N 0.883
cassava27750.m1 Manihot esculenta cassava27750.m1 N 0.880
cassava27856.m1 Manihot esculenta cassava27856.m1 N 0.880
cassava31098.valid.m1 Manihot esculenta cassava31098.valid.m1 N 0.883
cassava32469.m1 Manihot esculenta cassava32469.m1 N 0.845
cassava3377.m1 Manihot esculenta cassava3377.m1 N
cassava35271.valid.m1 Manihot esculenta cassava35271.valid.m1 N 0.883
cassava7222.valid.m1 Manihot esculenta cassava7222.valid.m1 N 0.845
Ca_01181 Cicer arietinum Ca_01181 N 0.913
Ca_03951 Cicer arietinum Ca_03951 N 0.845
Ca_12363 Cicer arietinum Ca_12363 N 0.910
Ca_13080 Cicer arietinum Ca_13080 N 0.845
Ca_16010 Cicer arietinum Ca_16010 N 0.880
chr1.LjT16B05.110.nd Lotus japonicus chr1.LjT16B05.110.nd N 0.883
chr1.LjT40H13.220.nd Lotus japonicus chr1.LjT40H13.220.nd N 0.883
chr5.CM0211.190.nc Lotus japonicus chr5.CM0211.190.nc N 0.913
chr6.CM0139.250.nd Lotus japonicus chr6.CM0139.250.nd N
chr6.CM0738.340.nd Lotus japonicus chr6.CM0738.340.nd N 0.913
Ciclev10001811m.g Citrus clementina Ciclev10001811m.g N 0.883
Ciclev10005031m.g Citrus clementina Ciclev10005031m.g N 0.880
Ciclev10005947m.g Citrus clementina Ciclev10005947m.g N
Ciclev10007150m.g Citrus clementina Ciclev10007150m.g N 0.845
Cla004300 Citrullus lanatus Cla004300 N
Cla005338 Citrullus lanatus Cla005338 N 0.883
Cla016479 Citrullus lanatus Cla016479 N 0.899
Cla020173 Citrullus lanatus Cla020173 N 0.913
Cla021744 Citrullus lanatus Cla021744 N 0.880
Cla022458 Citrullus lanatus Cla022458 N 0.883
Cucsa.012930 Cucumis sativus Cucsa.012930 N
Cucsa.091670 Cucumis sativus Cucsa.091670 N 0.913
Cucsa.160250 Cucumis sativus Cucsa.160250 N 0.883
Cucsa.163550 Cucumis sativus Cucsa.163550 N 0.883
Cucsa.256420 Cucumis sativus Cucsa.256420 N 0.880
Cucsa.313010 Cucumis sativus Cucsa.313010 N 0.899
Eucgr.A02667 Eucalyptus grandis Eucgr.A02667 N 0.845
Eucgr.B00048 Eucalyptus grandis Eucgr.B00048 N 0.883
Eucgr.E00273 Eucalyptus grandis Eucgr.E00273 N 0.910
Eucgr.H03591 Eucalyptus grandis Eucgr.H03591 N
Eucgr.H04468 Eucalyptus grandis Eucgr.H04468 N 0.913
evm.TU.supercontig_3.51 Carica papaya evm.TU.supercontig_3.51 N
evm.TU.supercontig_36.191 Carica papaya evm.TU.supercontig_36.191 N 0.880
evm.TU.supercontig_48.15 Carica papaya evm.TU.supercontig_48.15 N 0.913
evm.TU.supercontig_59.132 Carica papaya evm.TU.supercontig_59.132 N 0.880
FAMA Arabidopsis thaliana AT3G24140 N 0.880
fgenesh1_pg.C_scaffold_1002057 Arabidopsis lyrata fgenesh1_pg.C_scaffold_1002057 N 0.883
FMA Arabidopsis lyrata scaffold_302925.1 N 0.880
FMA Vitis vinifera VIT_05s0029g00050 N 0.880
gene02199-v1.0-hybrid Fragaria vesca gene02199-v1.0-hybrid N 0.910
gene06093-v1.0-hybrid Fragaria vesca gene06093-v1.0-hybrid N 0.854
gene12030-v1.0-hybrid Fragaria vesca gene12030-v1.0-hybrid N 0.883
gene22289-v1.0-hybrid Fragaria vesca gene22289-v1.0-hybrid N 0.883
GLYMA01G23230 Glycine max GLYMA01G23230 N 0.880
GLYMA02G14290 Glycine max GLYMA02G14290 N 0.880
GLYMA02G37313 Glycine max GLYMA02G37313 N 0.883
GLYMA03G39990 Glycine max GLYMA03G39990 N 0.913
GLYMA04G10630 Glycine max GLYMA04G10630 N 0.883
GLYMA04G41710 Glycine max GLYMA04G41710 N 0.845
GLYMA06G10470 Glycine max GLYMA06G10470 N 0.883
GLYMA06G13081 Glycine max GLYMA06G13081 N 0.845
GLYMA06G35330 Glycine max GLYMA06G35330 N 0.910
GLYMA08G36590 Glycine max GLYMA08G36590 N 0.910
GLYMA10G29760 Glycine max GLYMA10G29760 N 0.872
GLYMA13G08740 Glycine max GLYMA13G08740 N
GLYMA13G27880 Glycine max GLYMA13G27880 N
GLYMA14G35560 Glycine max GLYMA14G35560 N 0.883
GLYMA15G11130 Glycine max GLYMA15G11130 N
GLYMA19G42520 Glycine max GLYMA19G42520 N 0.913
GLYMA20G37550 Glycine max GLYMA20G37550 N 0.883
Gorai.006G054300 Gossypium raimondii Gorai.006G054300 N
Gorai.006G217200 Gossypium raimondii Gorai.006G217200 N 0.910
Gorai.008G225800 Gossypium raimondii Gorai.008G225800 N 0.910
Gorai.008G270700 Gossypium raimondii Gorai.008G270700 N 0.845
Gorai.011G159100 Gossypium raimondii Gorai.011G159100 N 0.880
GRMZM2G045109 Zea mays GRMZM2G045109 N
GRMZM2G064638 Zea mays GRMZM2G064638 N 0.845
GRMZM2G082586 Zea mays GRMZM2G082586 N 0.883
GRMZM2G085751 Zea mays GRMZM2G085751 N 0.845
GRMZM2G417164 Zea mays GRMZM2G417164 N
GSMUA_Achr10G01060_001 Musa acuminata GSMUA_Achr10G01060_001 N 0.845
GSMUA_Achr10G30300_001 Musa acuminata GSMUA_Achr10G30300_001 N 0.883
GSMUA_Achr5G06780_001 Musa acuminata GSMUA_Achr5G06780_001 N
GSMUA_Achr7G12790_001 Musa acuminata GSMUA_Achr7G12790_001 N 0.883
GSMUA_Achr7G21110_001 Musa acuminata GSMUA_Achr7G21110_001 N
GSMUA_Achr7G21190_001 Musa acuminata GSMUA_Achr7G21190_001 N
GSMUA_Achr8G17650_001 Musa acuminata GSMUA_Achr8G17650_001 N 0.883
GSMUA_Achr8G19870_001 Musa acuminata GSMUA_Achr8G19870_001 N 0.845
LPERR02G09400 Leersia perrieri LPERR02G09400 N 0.845
LPERR05G23890 Leersia perrieri LPERR05G23890 N
LPERR06G13950 Leersia perrieri LPERR06G13950 N 0.845
Lus10000332.g Linum usitatissimum Lus10000332.g N 0.883
Lus10001066.g Linum usitatissimum Lus10001066.g N
Lus10007139.g Linum usitatissimum Lus10007139.g N 0.869
Lus10014938.g Linum usitatissimum Lus10014938.g N 0.845
Lus10016680.g Linum usitatissimum Lus10016680.g N 0.880
Lus10029950.g Linum usitatissimum Lus10029950.g N 0.883
Lus10039328.g Linum usitatissimum Lus10039328.g N
MDP0000131133 Malus domestica MDP0000131133 N
MDP0000205030 Malus domestica MDP0000205030 N 0.854
MDP0000267178 Malus domestica MDP0000267178 N 0.913
MDP0000318772 Malus domestica MDP0000318772 N 0.854
MDP0000646823 Malus domestica MDP0000646823 N 0.880
MDP0000672131 Malus domestica MDP0000672131 N 0.883
MDP0000944210 Malus domestica MDP0000944210 N 0.883
mgf011108m Mimulus guttatus mgf011108m N 0.856
mgf014552m Mimulus guttatus mgf014552m N 0.845
mgf015694m Mimulus guttatus mgf015694m N 0.910
MLOC_21759 Hordeum vulgare MLOC_21759 N 0.883
MLOC_54435 Hordeum vulgare MLOC_54435 N 0.845
MTR_0194s0050 Medicago truncatula MTR_0194s0050 N 0.880
MTR_1g028470 Medicago truncatula MTR_1g028470 N
MTR_2g022280 Medicago truncatula MTR_2g022280 N
MTR_3g090850 Medicago truncatula MTR_3g090850 N 0.845
MTR_3g099620 Medicago truncatula MTR_3g099620 N 0.883
MTR_5g064950 Medicago truncatula MTR_5g064950 N 0.859
MTR_7g113830 Medicago truncatula MTR_7g113830 N 0.913
MTR_8g066770 Medicago truncatula MTR_8g066770 N 0.910
MUTE Arabidopsis thaliana AT3G06120 N
MUTE Arabidopsis lyrata scaffold_300691.1 N
MUTE Vitis vinifera VIT_05s0020g02700 N
OB02G19900 Oryza brachyantha OB02G19900 N 0.845
OB05G35750 Oryza brachyantha OB05G35750 N
OB09G19960 Oryza brachyantha OB09G19960 N 0.883
OBART02G11110 Oryza barthii OBART02G11110 N 0.845
OBART06G16920 Oryza barthii OBART06G16920 N 0.845
OGLUM02G11060 Oryza glumaepatula OGLUM02G11060 N 0.845
OGLUM06G17990 Oryza glumaepatula OGLUM06G17990 N 0.845
OLONG_015104 Oryza longistaminata OLONG_015104 N 0.845
OMERI02G11850 Oryza meridionalis OMERI02G11850 N 0.845
OMERI06G17780 Oryza meridionalis OMERI06G17780 N 0.845
OMERI09G10430 Oryza meridionalis OMERI09G10430 N 0.883
ONIVA02G12460 Oryza nivara ONIVA02G12460 N 0.845
ONIVA06G19730 Oryza nivara ONIVA06G19730 N 0.845
ONIVA09G13890 Oryza nivara ONIVA09G13890 N 0.883
OPUNC02G09860 Oryza punctata OPUNC02G09860 N 0.845
OPUNC06G15310 Oryza punctata OPUNC06G15310 N 0.845
OPUNC09G11790 Oryza punctata OPUNC09G11790 N 0.883
orange1.1g014477m.g Citrus sinensis orange1.1g014477m.g N 0.880
orange1.1g020210m.g Citrus sinensis orange1.1g020210m.g N 0.883
orange1.1g036531m.g Citrus sinensis orange1.1g036531m.g N 0.883
orange1.1g042904m.g Citrus sinensis orange1.1g042904m.g N 0.845
ORGLA02G0100500 Oryza glaberrima ORGLA02G0100500 N 0.845
ORGLA06G0140300 Oryza glaberrima ORGLA06G0140300 N 0.845
ORGLA09G0101900 Oryza glaberrima ORGLA09G0101900 N 0.883
ORUFI02G11080 Oryza rufipogon ORUFI02G11080 N 0.845
ORUFI06G17910 Oryza rufipogon ORUFI06G17910 N 0.845
ORUFI09G14410 Oryza rufipogon ORUFI09G14410 N 0.883
OS02G0257500 Oryza sativa OS02G0257500 N 0.845
OS06G0526100 Oryza sativa OS06G0526100 N 0.845
OS09G0468700 Oryza sativa OS09G0468700 N 0.883
Pavir.Aa02723 Panicum virgatum Pavir.Aa02723 N 0.845
Pavir.Ab01030 Panicum virgatum Pavir.Ab01030 N 0.845
Pavir.Bb02386 Panicum virgatum Pavir.Bb02386 N 0.883
Pavir.Da00918 Panicum virgatum Pavir.Da00918 N 0.845
Pavir.Db01402 Panicum virgatum Pavir.Db01402 N 0.845
Pavir.Ea00071 Panicum virgatum Pavir.Ea00071 N
Pavir.J22933 Panicum virgatum Pavir.J22933 N 0.883
PDK_20s1314901g001 Phoenix dactylifera PDK_20s1314901g001 N 0.845
PGSC0003DMG400009101 Solanum tuberosum PGSC0003DMG400009101 N
PGSC0003DMG400015760 Solanum tuberosum PGSC0003DMG400015760 N 0.880
PGSC0003DMG400017540 Solanum tuberosum PGSC0003DMG400017540 N 0.910
PGSC0003DMG400028578 Solanum tuberosum PGSC0003DMG400028578 N 0.913
PGSC0003DMG400029634 Solanum tuberosum PGSC0003DMG400029634 N 0.880
PK01904.1 Cannabis sativa PK01904.1 N 0.845
PK04856.1 Cannabis sativa PK04856.1 N 0.880
PK14736.1 Cannabis sativa PK14736.1 N 0.883
PK18533.1 Cannabis sativa PK18533.1 N
PK21294.1 Cannabis sativa PK21294.1 N 0.883
PK28391.1 Cannabis sativa PK28391.1 N 0.880
Pm003380 Prunus mume Pm003380 N 0.883
Pm004489 Prunus mume Pm004489 N 0.883
Pm008014 Prunus mume Pm008014 N 0.854
Pm009474 Prunus mume Pm009474 N 0.880
Pm019784 Prunus mume Pm019784 N
Pm023207 Prunus mume Pm023207 N 0.880
POPTR_0001s32160 Populus trichocarpa POPTR_0001s32160 N 0.880
POPTR_0002s10230 Populus trichocarpa POPTR_0002s10230 N 0.883
POPTR_0005s04160 Populus trichocarpa POPTR_0005s04160 N 0.913
POPTR_0008s20720 Populus trichocarpa POPTR_0008s20720 N
POPTR_0012s01370 Populus trichocarpa POPTR_0012s01370 N 0.845
POPTR_0013s02680 Populus trichocarpa POPTR_0013s02680 N 0.913
POPTR_0015s06160 Populus trichocarpa POPTR_0015s06160 N 0.845
POPTR_0017s08160 Populus trichocarpa POPTR_0017s08160 N 0.880
PRUPE_ppa009461mg Prunus persica PRUPE_ppa009461mg N 0.883
PRUPE_ppa011095mg Prunus persica PRUPE_ppa011095mg N 0.883
PRUPE_ppa015055mg Prunus persica PRUPE_ppa015055mg N
PRUPE_ppa017746mg Prunus persica PRUPE_ppa017746mg N 0.880
PRUPE_ppa019299mg Prunus persica PRUPE_ppa019299mg N 0.854
PRUPE_ppa020429mg Prunus persica PRUPE_ppa020429mg N 0.880
SapurV1A.0022s0230 Salix purpurea SapurV1A.0022s0230 N
SapurV1A.0092s0130 Salix purpurea SapurV1A.0092s0130 N 0.913
SapurV1A.0377s0010 Salix purpurea SapurV1A.0377s0010 N 0.845
SapurV1A.0462s0070 Salix purpurea SapurV1A.0462s0070 N 0.880
SapurV1A.0613s0120 Salix purpurea SapurV1A.0613s0120 N 0.883
SapurV1A.1043s0040 Salix purpurea SapurV1A.1043s0040 N 0.845
SapurV1A.1055s0160 Salix purpurea SapurV1A.1055s0160 N 0.913
SapurV1A.1124s0170 Salix purpurea SapurV1A.1124s0170 N 0.913
Sb02g027210 Sorghum bicolor Sb02g027210 N 0.883
Sb04g009390 Sorghum bicolor Sb04g009390 N 0.845
Sb09g030930 Sorghum bicolor Sb09g030930 N
Sb10g020490 Sorghum bicolor Sb10g020490 N 0.845
SELMODRAFT_410402 Selaginella moellendorffii SELMODRAFT_410402 N
SELMODRAFT_428659 Selaginella moellendorffii SELMODRAFT_428659 N 0.880
SELMODRAFT_430716 Selaginella moellendorffii SELMODRAFT_430716 N 0.880
SELMODRAFT_451148 Selaginella moellendorffii SELMODRAFT_451148 N
Si004438m.g Setaria italica Si004438m.g N
Si006640m.g Setaria italica Si006640m.g N 0.845
Si013925m.g Setaria italica Si013925m.g N 0.883
Si017482m.g Setaria italica Si017482m.g N 0.845
Solyc01g080050.2 Solanum lycopersicum Solyc01g080050.2 N
Solyc03g007410.2 Solanum lycopersicum Solyc03g007410.2 N 0.845
Solyc05g053660.1 Solanum lycopersicum Solyc05g053660.1 N 0.880
Solyc08g076820.2 Solanum lycopersicum Solyc08g076820.2 N 0.910
Solyc09g091760.1 Solanum lycopersicum Solyc09g091760.1 N 0.880
SPCH Arabidopsis lyrata Al_scaffold_0008_1712 N 0.845
SPCH Arabidopsis thaliana AT5G53210 N 0.845
SPCH Vitis vinifera VIT_16s0050g02500 N 0.845
TCM_015345 Theobroma cacao TCM_015345 N 0.845
TCM_015694 Theobroma cacao TCM_015694 N 0.910
TCM_020336 Theobroma cacao TCM_020336 N 0.880
TCM_020520 Theobroma cacao TCM_020520 N
TCM_026599 Theobroma cacao TCM_026599 N 0.913
TCM_034439 Theobroma cacao TCM_034439 N 0.883
Thhalv10002558m.g Eutrema salsugineum Thhalv10002558m.g N 0.880
Thhalv10009836m.g Eutrema salsugineum Thhalv10009836m.g N 0.883
Thhalv10013877m.g Eutrema salsugineum Thhalv10013877m.g N 0.845
Thhalv10018867m.g Eutrema salsugineum Thhalv10018867m.g N 0.883
Thhalv10022251m.g Eutrema salsugineum Thhalv10022251m.g N
Traes_5BL_DA72CE20D Triticum aestivum Traes_5BL_DA72CE20D N 0.883
Traes_7DL_1717A9083 Triticum aestivum Traes_7DL_1717A9083 N 0.845
TRIUR3_09788 Triticum urartu TRIUR3_09788 N 0.883
VIT_14s0128g00110 Vitis vinifera VIT_14s0128g00110 N 0.913
VIT_18s0001g06650 Vitis vinifera VIT_18s0001g06650 N 0.883