scaffold6-EXSNAP2012.144 (Pristionchus exspectatus)
bHLH

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00010 (HLH) IPR001092 scaffold6-EXSNAP2012.144 T054851_2.00 WormBase:ParaSite (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
hlh-1
M00746_2.00 		Caenorhabditis elegans
RACAGCTGNN
NNCAGCTGTY		 PBM
DeMasi et al.(2011)
HLH-1 		0.863 0.885
hlh-1
M00929_2.00 		Caenorhabditis elegans
GACAGCTG
CAGCTGTC		 PBM
Grove et al.(2009)
HLH1 		0.863 0.885
hlh-1
M08063_2.00 		Caenorhabditis elegans
VAACAGYTGNY
RNCARCTGTTB		 ChIP-seq
Mathelier et al.(2014)
MA0545.1 		0.863 0.885
hlh-1
M09481_2.00 		Caenorhabditis elegans
NNRNCARNTGNY
RNCANYTGNYNN		 Misc
Heinz et al.(2010)
cElegans-Embryo-HLH1_modEncode 		0.863 0.885
For this family, TFs with SR scores > 0.838 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
scaffold6-EXSNAP2012.144 bHLH 166 217

Links

Other bHLH family TFs
Other Pristionchus exspectatus TFs

30 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
AGL87 Arabidopsis thaliana AT1G22590 N
Bo5g038690 Brassica oleracea Bo5g038690 N
Bo7g057820 Brassica oleracea Bo7g057820 N
Bostr.12659s0111 Boechera stricta Bostr.12659s0111 N
Bra012335 Brassica rapa Bra012335 N
Cagra.0114s0045 Capsella grandiflora Cagra.0114s0045 N
Cagra.2356s0007 Capsella grandiflora Cagra.2356s0007 N
Carubv10006189m.g Capsella rubella Carubv10006189m.g N
Carubv10011303m.g Capsella rubella Carubv10011303m.g N
Carubv10021360m.g Capsella rubella Carubv10021360m.g N
Carubv10021540m.g Capsella rubella Carubv10021540m.g N
Carubv10021762m.g Capsella rubella Carubv10021762m.g N
Carubv10022252m.g Capsella rubella Carubv10022252m.g N
Thhalv10008961m.g Eutrema salsugineum Thhalv10008961m.g N