CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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bcl11ba
(
Tetraodon nigroviridis
)
C2H2 ZF
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00096 (zf-C2H2)
IPR007087
ENSTNIG00000008283
T112028_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
BCL11B
M04453_2.00
Homo sapiens
GTGAACGBNDNNVCTACAC
GTGTAGBNNHNVCGTTCAC
SELEX
Yin et al.(2017)
BCL11B_eDBD_HT-SELEX
0.817
0.974
BCL11B
M04454_2.00
Homo sapiens
GTGAACGBNDNHVCTACAC
GTGTAGBDNHNVCGTTCAC
SELEX
Yin et al.(2017)
BCL11B_eDBD_Methyl-HT-SELEX
0.817
0.974
BCL11A
M07926_2.00
Homo sapiens
BTYTCASTTCCYYHH
DDRRGGAASTGARAV
ChIP-seq
Gerstein et al.(2012)
GM12878_BCL11A_HudsonAlpha
0.811
0.947
BCL11A
M08881_2.00
Homo sapiens
BHBYCABTTCCYBHNYN
NRNDVRGGAAVTGRVDV
Misc
Kulakovskiy et al.(2013)
BC11A_HUMAN.H11MO.0.A
0.811
0.947
BCL11A
M10187_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$BCL11A_02
0.811
0.947
For this family, TFs with SR scores >
0.755
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSTNIP00000011113
C2H2 ZF
384
405
SCEFCGKTFKFQSNLVVHRRSH
ENSTNIP00000011113
C2H2 ZF
411
433
YKCQLCDHACAQASKLKRHMKTH
ENSTNIP00000011113
C2H2 ZF
707
729
DTCEFCGKVFKNCSNLTVHRRSH
ENSTNIP00000011113
C2H2 ZF
735
757
YKCELCNYACAQSSKLTRHMKTH
ENSTNIP00000011113
C2H2 ZF
765
788
YRCDICQMPFSVYSTLEKHMKKWH
Links
Other
C2H2 ZF
family TFs
Other
Tetraodon nigroviridis
TFs
128 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Aan_R000616
Calypte anna
Aan_R000616
I
0.817
Aan_R006276
Calypte anna
Aan_R006276
I
0.811
AARA004246
Anopheles arabiensis
AARA004246
N
0.756
Afo_R004626
Aptenodytes forsteri
Afo_R004626
I
0.817
Afo_R011357
Aptenodytes forsteri
Afo_R011357
I
0.811
Alligator_sinensis_CCG008166.1
Alligator sinensis
Alligator_sinensis_CCG008166.1
I
0.811
AMEC015245
Anopheles melas
AMEC015245
I
0.759
ASIS012904
Anopheles sinensis
ASIS012904
N
0.757
BCL11A
Anolis carolinensis
ENSACAG00000015159
I
0.811
BCL11A
Callithrix jacchus
ENSCJAG00000009226
I
0.811
BCL11A
Cavia porcellus
ENSCPOG00000007587
I
0.811
BCL11A
Dasypus novemcinctus
ENSDNOG00000019842
I
0.811
Bcl11a
Dipodomys ordii
ENSDORG00000010064
I
0.811
BCL11A
Erinaceus europaeus
ENSEEUG00000010958
I
0.811
BCL11A
Felis catus
ENSFCAG00000027154
I
0.811
BCL11A
Homo sapiens
ENSG00000119866
D
0.811
BCL11A
Gorilla gorilla
ENSGGOG00000007337
I
0.811
BCL11A
Loxodonta africana
ENSLAFG00000003101
I
0.811
BCL11A
Meleagris gallopavo
ENSMGAG00000013042
I
0.811
BCL11A
Microcebus murinus
ENSMICG00000015052
I
0.811
Bcl11a
Mus musculus
ENSMUSG00000000861
I
0.811
BCL11A
Ornithorhynchus anatinus
ENSOANG00000012402
I
0.811
BCL11A
Oryctolagus cuniculus
ENSOCUG00000023948
I
0.811
BCL11A
Pteropus vampyrus
ENSPVAG00000000042
I
0.811
Bcl11a
Rattus norvegicus
ENSRNOG00000007049
I
0.811
BCL11A
Sus scrofa
ENSSSCG00000008392
I
0.811
BCL11A
Taeniopygia guttata
ENSTGUG00000006790
I
0.811
BCL11A
Tursiops truncatus
ENSTTRG00000006191
I
0.811
BCL11A
Vicugna pacos
ENSVPAG00000000491
I
0.811
bcl11a
Xenopus tropicalis
XB-GENE-486641
I
0.811
bcl11aa
Danio rerio
ENSDARG00000061352
I
0.806
bcl11aa
Gasterosteus aculeatus
ENSGACG00000013419
I
0.790
bcl11aa
Oryzias latipes
ENSORLG00000001704
I
0.794
bcl11aa
Takifugu rubripes
ENSTRUG00000003815
I
0.789
bcl11ab
Danio rerio
ENSDARG00000063153
I
0.806
bcl11ab
Gasterosteus aculeatus
ENSGACG00000019222
I
0.803
bcl11ab
Oryzias latipes
ENSORLG00000013169
I
0.806
bcl11ab
Tetraodon nigroviridis
ENSTNIG00000012076
I
0.806
bcl11ab
Takifugu rubripes
ENSTRUG00000013751
I
0.806
BCL11B
Bos taurus
ENSBTAG00000018019
I
0.817
BCL11B
Canis familiaris
ENSCAFG00000017809
I
0.817
BCL11B
Callithrix jacchus
ENSCJAG00000006713
I
0.817
BCL11B
Dasypus novemcinctus
ENSDNOG00000012677
I
0.817
BCL11B
Homo sapiens
ENSG00000127152
D
0.817
BCL11B
Gorilla gorilla
ENSGGOG00000001232
I
0.817
BCL11B
Loxodonta africana
ENSLAFG00000009254
I
0.817
BCL11B
Macaca mulatta
ENSMMUG00000003261
I
0.817
BCL11B
Monodelphis domestica
ENSMODG00000012964
I
0.817
Bcl11b
Mus musculus
ENSMUSG00000048251
I
0.817
BCL11B
Ornithorhynchus anatinus
ENSOANG00000014770
I
0.817
BCL11B
Otolemur garnettii
ENSOGAG00000033204
I
0.817
BCL11B
Pan troglodytes
ENSPTRG00000006707
I
0.817
BCL11B
Pteropus vampyrus
ENSPVAG00000015516
I
0.817
Bcl11b
Rattus norvegicus
ENSRNOG00000005776
I
0.817
BCL11B
Sus scrofa
ENSSSCG00000002507
I
0.817
BCL11B
Taeniopygia guttata
ENSTGUG00000012711
I
0.817
BCL11B
Tursiops truncatus
ENSTTRG00000012140
I
0.812
bcl11ba
Gasterosteus aculeatus
ENSGACG00000013118
I
0.825
bcl11ba
Oryzias latipes
ENSORLG00000010826
I
0.827
bcl11ba
Takifugu rubripes
ENSTRUG00000003531
I
0.827
BGLB012676
Biomphalaria glabrata
BGLB012676
I
0.772
Cmyd_10008592
Chelonia mydas
Cmyd_10008592
I
0.811
Cmyd_10012109
Chelonia mydas
Cmyd_10012109
I
0.817
ENSACAG00000013085
Anolis carolinensis
ENSACAG00000013085
I
0.817
ENSAMEG00000015813
Ailuropoda melanoleuca
ENSAMEG00000015813
I
0.811
ENSAMXG00000004597
Astyanax mexicanus
ENSAMXG00000004597
I
0.794
ENSAMXG00000015839
Astyanax mexicanus
ENSAMXG00000015839
I
0.817
ENSAMXG00000018130
Astyanax mexicanus
ENSAMXG00000018130
I
0.813
ENSAPLG00000006283
Anas platyrhynchos
ENSAPLG00000006283
I
0.817
ENSAPLG00000007735
Anas platyrhynchos
ENSAPLG00000007735
I
0.811
ENSBTAP00000023987-D2
Bos grunniens
ENSBTAP00000023987-D2
I
0.811
ENSCPOG00000009946
Cavia porcellus
ENSCPOG00000009946
I
0.817
ENSCSAG00000010477
Chlorocebus sabaeus
ENSCSAG00000010477
I
0.817
ENSFALG00000011123
Ficedula albicollis
ENSFALG00000011123
I
0.811
ENSGALG00000007866
Gallus gallus
ENSGALG00000007866
I
0.811
ENSGALG00000011127
Gallus gallus
ENSGALG00000011127
I
0.817
ENSGALG00000028278
Gallus gallus
ENSGALG00000028278
I
0.817
ENSGMOG00000012414
Gadus morhua
ENSGMOG00000012414
I
0.825
ENSGMOG00000015842
Gadus morhua
ENSGMOG00000015842
I
0.805
ENSLACG00000003560
Latimeria chalumnae
ENSLACG00000003560
I
0.811
ENSLOCG00000008679
Lepisosteus oculatus
ENSLOCG00000008679
I
0.827
ENSLOCG00000016135
Lepisosteus oculatus
ENSLOCG00000016135
I
0.803
ENSMEUG00000001829
Macropus eugenii
ENSMEUG00000001829
I
0.811
ENSMMUG00000011303
Macaca mulatta
ENSMMUG00000011303
I
0.811
ENSNLEG00000000711
Nomascus leucogenys
ENSNLEG00000000711
I
0.817
ENSOCUG00000024296
Oryctolagus cuniculus
ENSOCUG00000024296
I
0.801
ENSONIG00000001067
Oreochromis niloticus
ENSONIG00000001067
I
0.815
ENSONIG00000002906
Oreochromis niloticus
ENSONIG00000002906
I
0.794
ENSONIG00000011060
Oreochromis niloticus
ENSONIG00000011060
I
0.827
ENSONIG00000018855
Oreochromis niloticus
ENSONIG00000018855
I
0.806
ENSP00000338774
Macaca fascicularis
ENSP00000338774
I
0.811
ENSP00000349723
Macaca fascicularis
ENSP00000349723
I
0.813
ENSPANG00000004313
Papio anubis
ENSPANG00000004313
I
0.817
ENSPFOG00000003609
Poecilia formosa
ENSPFOG00000003609
I
0.813
ENSPFOG00000007224
Poecilia formosa
ENSPFOG00000007224
I
0.825
ENSPFOG00000007302
Poecilia formosa
ENSPFOG00000007302
I
0.806
ENSPFOG00000019062
Poecilia formosa
ENSPFOG00000019062
I
0.794
ENSPPYG00000006131
Pongo abelii
ENSPPYG00000006131
I
0.817
ENSPSIG00000013079
Pelodiscus sinensis
ENSPSIG00000013079
I
0.817
ENSPSIG00000013644
Pelodiscus sinensis
ENSPSIG00000013644
I
0.811
ENSSHAG00000009291
Sarcophilus harrisii
ENSSHAG00000009291
I
0.817
ENSSHAG00000015804
Sarcophilus harrisii
ENSSHAG00000015804
I
0.811
ENSSTOG00000004523
Ictidomys tridecemlineatus
ENSSTOG00000004523
I
0.811
ENSSTOG00000021531
Ictidomys tridecemlineatus
ENSSTOG00000021531
I
0.817
ENSTSYG00000009153
Tarsius syrichta
ENSTSYG00000009153
I
0.811
ENSXMAG00000007242
Xiphophorus maculatus
ENSXMAG00000007242
I
0.792
ENSXMAG00000019910
Xiphophorus maculatus
ENSXMAG00000019910
I
0.813
ENSXMAG00000020344
Xiphophorus maculatus
ENSXMAG00000020344
I
0.825
fgenesh2_pg.scaffold_136000067
Branchiostoma floridae
fgenesh2_pg.scaffold_136000067
I
0.763
Gfo_R006733
Geospiza fortis
Gfo_R006733
I
0.817
Gfo_R008167
Geospiza fortis
Gfo_R008167
I
0.811
HHAL008065-PA
Halyomorpha halys
HHAL008065-PA
I
0.774
im:7142702
Danio rerio
ENSDARG00000067727
I
0.813
im:7142702
Gasterosteus aculeatus
ENSGACG00000005537
I
0.813
im:7142702
Oryzias latipes
ENSORLG00000010488
I
0.815
im:7142702
Tetraodon nigroviridis
ENSTNIG00000009693
I
0.803
im:7142702
Takifugu rubripes
ENSTRUG00000018074
I
0.815
ISCW016418
Ixodes scapularis
ISCW016418
I
0.780
L798_02171
Zootermopsis nevadensis
L798_02171
I
0.763
LotgiG139415
Lottia gigantea
LotgiG139415
I
0.767
Ocbimv22018271m.g
Octopus bimaculoides
Ocbimv22018271m.g
I
0.795
PHUM606430
Pediculus humanus
PHUM606430
I
0.773
Pvit_09536
Pogona vitticeps
Pvit_09536
I
0.817
Pvit_18645
Pogona vitticeps
Pvit_18645
I
0.811
RPRC001562
Rhodnius prolixus
RPRC001562
I
0.768
Sakowv30026316m.g
Saccoglossus kowalevskii
Sakowv30026316m.g
I
0.815
SMAR003355
Strigamia maritima
SMAR003355
I
0.792
SPU_018909
Strongylocentrotus purpuratus
SPU_018909
I
0.807