bcl11ba (Tetraodon nigroviridis)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00096 (zf-C2H2) IPR007087 ENSTNIG00000008283 T112028_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
BCL11B
M04453_2.00 		Homo sapiens
GTGAACGBNDNNVCTACAC
GTGTAGBNNHNVCGTTCAC		 SELEX
Yin et al.(2017)
BCL11B_eDBD_HT-SELEX 		0.817 0.974
BCL11B
M04454_2.00 		Homo sapiens
GTGAACGBNDNHVCTACAC
GTGTAGBDNHNVCGTTCAC		 SELEX
Yin et al.(2017)
BCL11B_eDBD_Methyl-HT-SELEX 		0.817 0.974
BCL11A
M07926_2.00 		Homo sapiens
BTYTCASTTCCYYHH
DDRRGGAASTGARAV		 ChIP-seq
Gerstein et al.(2012)
GM12878_BCL11A_HudsonAlpha 		0.811 0.947
BCL11A
M08881_2.00 		Homo sapiens
BHBYCABTTCCYBHNYN
NRNDVRGGAAVTGRVDV		 Misc
Kulakovskiy et al.(2013)
BC11A_HUMAN.H11MO.0.A 		0.811 0.947
BCL11A
M10187_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$BCL11A_02 		0.811 0.947
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSTNIP00000011113 C2H2 ZF 384 405
ENSTNIP00000011113 C2H2 ZF 411 433
ENSTNIP00000011113 C2H2 ZF 707 729
ENSTNIP00000011113 C2H2 ZF 735 757
ENSTNIP00000011113 C2H2 ZF 765 788

Links

Other C2H2 ZF family TFs
Other Tetraodon nigroviridis TFs

128 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Aan_R000616 Calypte anna Aan_R000616 I 0.817
Aan_R006276 Calypte anna Aan_R006276 I 0.811
AARA004246 Anopheles arabiensis AARA004246 N 0.756
Afo_R004626 Aptenodytes forsteri Afo_R004626 I 0.817
Afo_R011357 Aptenodytes forsteri Afo_R011357 I 0.811
Alligator_sinensis_CCG008166.1 Alligator sinensis Alligator_sinensis_CCG008166.1 I 0.811
AMEC015245 Anopheles melas AMEC015245 I 0.759
ASIS012904 Anopheles sinensis ASIS012904 N 0.757
BCL11A Anolis carolinensis ENSACAG00000015159 I 0.811
BCL11A Callithrix jacchus ENSCJAG00000009226 I 0.811
BCL11A Cavia porcellus ENSCPOG00000007587 I 0.811
BCL11A Dasypus novemcinctus ENSDNOG00000019842 I 0.811
Bcl11a Dipodomys ordii ENSDORG00000010064 I 0.811
BCL11A Erinaceus europaeus ENSEEUG00000010958 I 0.811
BCL11A Felis catus ENSFCAG00000027154 I 0.811
BCL11A Homo sapiens ENSG00000119866 D 0.811
BCL11A Gorilla gorilla ENSGGOG00000007337 I 0.811
BCL11A Loxodonta africana ENSLAFG00000003101 I 0.811
BCL11A Meleagris gallopavo ENSMGAG00000013042 I 0.811
BCL11A Microcebus murinus ENSMICG00000015052 I 0.811
Bcl11a Mus musculus ENSMUSG00000000861 I 0.811
BCL11A Ornithorhynchus anatinus ENSOANG00000012402 I 0.811
BCL11A Oryctolagus cuniculus ENSOCUG00000023948 I 0.811
BCL11A Pteropus vampyrus ENSPVAG00000000042 I 0.811
Bcl11a Rattus norvegicus ENSRNOG00000007049 I 0.811
BCL11A Sus scrofa ENSSSCG00000008392 I 0.811
BCL11A Taeniopygia guttata ENSTGUG00000006790 I 0.811
BCL11A Tursiops truncatus ENSTTRG00000006191 I 0.811
BCL11A Vicugna pacos ENSVPAG00000000491 I 0.811
bcl11a Xenopus tropicalis XB-GENE-486641 I 0.811
bcl11aa Danio rerio ENSDARG00000061352 I 0.806
bcl11aa Gasterosteus aculeatus ENSGACG00000013419 I 0.790
bcl11aa Oryzias latipes ENSORLG00000001704 I 0.794
bcl11aa Takifugu rubripes ENSTRUG00000003815 I 0.789
bcl11ab Danio rerio ENSDARG00000063153 I 0.806
bcl11ab Gasterosteus aculeatus ENSGACG00000019222 I 0.803
bcl11ab Oryzias latipes ENSORLG00000013169 I 0.806
bcl11ab Tetraodon nigroviridis ENSTNIG00000012076 I 0.806
bcl11ab Takifugu rubripes ENSTRUG00000013751 I 0.806
BCL11B Bos taurus ENSBTAG00000018019 I 0.817
BCL11B Canis familiaris ENSCAFG00000017809 I 0.817
BCL11B Callithrix jacchus ENSCJAG00000006713 I 0.817
BCL11B Dasypus novemcinctus ENSDNOG00000012677 I 0.817
BCL11B Homo sapiens ENSG00000127152 D 0.817
BCL11B Gorilla gorilla ENSGGOG00000001232 I 0.817
BCL11B Loxodonta africana ENSLAFG00000009254 I 0.817
BCL11B Macaca mulatta ENSMMUG00000003261 I 0.817
BCL11B Monodelphis domestica ENSMODG00000012964 I 0.817
Bcl11b Mus musculus ENSMUSG00000048251 I 0.817
BCL11B Ornithorhynchus anatinus ENSOANG00000014770 I 0.817
BCL11B Otolemur garnettii ENSOGAG00000033204 I 0.817
BCL11B Pan troglodytes ENSPTRG00000006707 I 0.817
BCL11B Pteropus vampyrus ENSPVAG00000015516 I 0.817
Bcl11b Rattus norvegicus ENSRNOG00000005776 I 0.817
BCL11B Sus scrofa ENSSSCG00000002507 I 0.817
BCL11B Taeniopygia guttata ENSTGUG00000012711 I 0.817
BCL11B Tursiops truncatus ENSTTRG00000012140 I 0.812
bcl11ba Gasterosteus aculeatus ENSGACG00000013118 I 0.825
bcl11ba Oryzias latipes ENSORLG00000010826 I 0.827
bcl11ba Takifugu rubripes ENSTRUG00000003531 I 0.827
BGLB012676 Biomphalaria glabrata BGLB012676 I 0.772
Cmyd_10008592 Chelonia mydas Cmyd_10008592 I 0.811
Cmyd_10012109 Chelonia mydas Cmyd_10012109 I 0.817
ENSACAG00000013085 Anolis carolinensis ENSACAG00000013085 I 0.817
ENSAMEG00000015813 Ailuropoda melanoleuca ENSAMEG00000015813 I 0.811
ENSAMXG00000004597 Astyanax mexicanus ENSAMXG00000004597 I 0.794
ENSAMXG00000015839 Astyanax mexicanus ENSAMXG00000015839 I 0.817
ENSAMXG00000018130 Astyanax mexicanus ENSAMXG00000018130 I 0.813
ENSAPLG00000006283 Anas platyrhynchos ENSAPLG00000006283 I 0.817
ENSAPLG00000007735 Anas platyrhynchos ENSAPLG00000007735 I 0.811
ENSBTAP00000023987-D2 Bos grunniens ENSBTAP00000023987-D2 I 0.811
ENSCPOG00000009946 Cavia porcellus ENSCPOG00000009946 I 0.817
ENSCSAG00000010477 Chlorocebus sabaeus ENSCSAG00000010477 I 0.817
ENSFALG00000011123 Ficedula albicollis ENSFALG00000011123 I 0.811
ENSGALG00000007866 Gallus gallus ENSGALG00000007866 I 0.811
ENSGALG00000011127 Gallus gallus ENSGALG00000011127 I 0.817
ENSGALG00000028278 Gallus gallus ENSGALG00000028278 I 0.817
ENSGMOG00000012414 Gadus morhua ENSGMOG00000012414 I 0.825
ENSGMOG00000015842 Gadus morhua ENSGMOG00000015842 I 0.805
ENSLACG00000003560 Latimeria chalumnae ENSLACG00000003560 I 0.811
ENSLOCG00000008679 Lepisosteus oculatus ENSLOCG00000008679 I 0.827
ENSLOCG00000016135 Lepisosteus oculatus ENSLOCG00000016135 I 0.803
ENSMEUG00000001829 Macropus eugenii ENSMEUG00000001829 I 0.811
ENSMMUG00000011303 Macaca mulatta ENSMMUG00000011303 I 0.811
ENSNLEG00000000711 Nomascus leucogenys ENSNLEG00000000711 I 0.817
ENSOCUG00000024296 Oryctolagus cuniculus ENSOCUG00000024296 I 0.801
ENSONIG00000001067 Oreochromis niloticus ENSONIG00000001067 I 0.815
ENSONIG00000002906 Oreochromis niloticus ENSONIG00000002906 I 0.794
ENSONIG00000011060 Oreochromis niloticus ENSONIG00000011060 I 0.827
ENSONIG00000018855 Oreochromis niloticus ENSONIG00000018855 I 0.806
ENSP00000338774 Macaca fascicularis ENSP00000338774 I 0.811
ENSP00000349723 Macaca fascicularis ENSP00000349723 I 0.813
ENSPANG00000004313 Papio anubis ENSPANG00000004313 I 0.817
ENSPFOG00000003609 Poecilia formosa ENSPFOG00000003609 I 0.813
ENSPFOG00000007224 Poecilia formosa ENSPFOG00000007224 I 0.825
ENSPFOG00000007302 Poecilia formosa ENSPFOG00000007302 I 0.806
ENSPFOG00000019062 Poecilia formosa ENSPFOG00000019062 I 0.794
ENSPPYG00000006131 Pongo abelii ENSPPYG00000006131 I 0.817
ENSPSIG00000013079 Pelodiscus sinensis ENSPSIG00000013079 I 0.817
ENSPSIG00000013644 Pelodiscus sinensis ENSPSIG00000013644 I 0.811
ENSSHAG00000009291 Sarcophilus harrisii ENSSHAG00000009291 I 0.817
ENSSHAG00000015804 Sarcophilus harrisii ENSSHAG00000015804 I 0.811
ENSSTOG00000004523 Ictidomys tridecemlineatus ENSSTOG00000004523 I 0.811
ENSSTOG00000021531 Ictidomys tridecemlineatus ENSSTOG00000021531 I 0.817
ENSTSYG00000009153 Tarsius syrichta ENSTSYG00000009153 I 0.811
ENSXMAG00000007242 Xiphophorus maculatus ENSXMAG00000007242 I 0.792
ENSXMAG00000019910 Xiphophorus maculatus ENSXMAG00000019910 I 0.813
ENSXMAG00000020344 Xiphophorus maculatus ENSXMAG00000020344 I 0.825
fgenesh2_pg.scaffold_136000067 Branchiostoma floridae fgenesh2_pg.scaffold_136000067 I 0.763
Gfo_R006733 Geospiza fortis Gfo_R006733 I 0.817
Gfo_R008167 Geospiza fortis Gfo_R008167 I 0.811
HHAL008065-PA Halyomorpha halys HHAL008065-PA I 0.774
im:7142702 Danio rerio ENSDARG00000067727 I 0.813
im:7142702 Gasterosteus aculeatus ENSGACG00000005537 I 0.813
im:7142702 Oryzias latipes ENSORLG00000010488 I 0.815
im:7142702 Tetraodon nigroviridis ENSTNIG00000009693 I 0.803
im:7142702 Takifugu rubripes ENSTRUG00000018074 I 0.815
ISCW016418 Ixodes scapularis ISCW016418 I 0.780
L798_02171 Zootermopsis nevadensis L798_02171 I 0.763
LotgiG139415 Lottia gigantea LotgiG139415 I 0.767
Ocbimv22018271m.g Octopus bimaculoides Ocbimv22018271m.g I 0.795
PHUM606430 Pediculus humanus PHUM606430 I 0.773
Pvit_09536 Pogona vitticeps Pvit_09536 I 0.817
Pvit_18645 Pogona vitticeps Pvit_18645 I 0.811
RPRC001562 Rhodnius prolixus RPRC001562 I 0.768
Sakowv30026316m.g Saccoglossus kowalevskii Sakowv30026316m.g I 0.815
SMAR003355 Strigamia maritima SMAR003355 I 0.792
SPU_018909 Strongylocentrotus purpuratus SPU_018909 I 0.807