Alligator_sinensis_CCG001979.1 (Alligator sinensis)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00096 (zf-C2H2) IPR007087 Alligator_sinensis_CCG001979.1 T132996_2.00 GigaDB (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No TFs with similar DNA binding domains

DNA Binding Domains

Protein ID Domain From To Sequence
Alligator_sinensis_CCG001979.1 C2H2 ZF 92 114
Alligator_sinensis_CCG001979.1 C2H2 ZF 120 142
Alligator_sinensis_CCG001979.1 C2H2 ZF 148 170
Alligator_sinensis_CCG001979.1 C2H2 ZF 176 198
Alligator_sinensis_CCG001979.1 C2H2 ZF 220 243
Alligator_sinensis_CCG001979.1 C2H2 ZF 255 278
Alligator_sinensis_CCG001979.1 C2H2 ZF 285 306
Alligator_sinensis_CCG001979.1 C2H2 ZF 411 434
Alligator_sinensis_CCG001979.1 C2H2 ZF 451 474
Alligator_sinensis_CCG001979.1 C2H2 ZF 487 510
Alligator_sinensis_CCG001979.1 C2H2 ZF 534 559
Alligator_sinensis_CCG001979.1 C2H2 ZF 608 630
Alligator_sinensis_CCG001979.1 C2H2 ZF 638 660
Alligator_sinensis_CCG001979.1 C2H2 ZF 668 691
Alligator_sinensis_CCG001979.1 C2H2 ZF 696 719
Alligator_sinensis_CCG001979.1 C2H2 ZF 726 749
Alligator_sinensis_CCG001979.1 C2H2 ZF 783 806
Alligator_sinensis_CCG001979.1 C2H2 ZF 860 883
Alligator_sinensis_CCG001979.1 C2H2 ZF 904 926
Alligator_sinensis_CCG001979.1 C2H2 ZF 933 955

Links

Other C2H2 ZF family TFs
Other Alligator sinensis TFs

14 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
BRADI1G23060 Brachypodium distachyon BRADI1G23060 N
GRMZM2G019060 Zea mays GRMZM2G019060 N
GRMZM2G132794 Zea mays GRMZM2G132794 N
GRMZM2G172657 Zea mays GRMZM2G172657 N
GSMUA_Achr4G16460_001 Musa acuminata GSMUA_Achr4G16460_001 N
GSMUA_Achr8G30950_001 Musa acuminata GSMUA_Achr8G30950_001 N
LPERR07G17740 Leersia perrieri LPERR07G17740 N
MLOC_62665 Hordeum vulgare MLOC_62665 N
OB03G31410 Oryza brachyantha OB03G31410 N
OB07G26110 Oryza brachyantha OB07G26110 N
OBART07G20430 Oryza barthii OBART07G20430 N
OGLUM03G23190 Oryza glumaepatula OGLUM03G23190 N
OGLUM07G20210 Oryza glumaepatula OGLUM07G20210 N
OMERI03G20220 Oryza meridionalis OMERI03G20220 N
OMERI07G17100 Oryza meridionalis OMERI07G17100 N
ONIVA03G24000 Oryza nivara ONIVA03G24000 N
ONIVA07G18840 Oryza nivara ONIVA07G18840 N
OPUNC03G21050 Oryza punctata OPUNC03G21050 N
OPUNC07G19280 Oryza punctata OPUNC07G19280 N
ORGLA03G0208800 Oryza glaberrima ORGLA03G0208800 N
ORGLA07G0156800 Oryza glaberrima ORGLA07G0156800 N
ORUFI03G23130 Oryza rufipogon ORUFI03G23130 N
ORUFI07G21310 Oryza rufipogon ORUFI07G21310 N
Pavir.Ba01071 Panicum virgatum Pavir.Ba01071 N
Pavir.Bb01182 Panicum virgatum Pavir.Bb01182 N
Pavir.Ia02979 Panicum virgatum Pavir.Ia02979 N
Sb02g037890 Sorghum bicolor Sb02g037890 N
SHR1 Oryza sativa OS07G0586900 N
SHR1 Oryza indica BGIOSGA026037 N
SHR2 Oryza sativa OS03G0433200 N
SHR2 Oryza indica BGIOSGA010480 N
Si029296m.g Setaria italica Si029296m.g N
Si034653m.g Setaria italica Si034653m.g N
Traes_2AS_D0B21BF981 Triticum aestivum Traes_2AS_D0B21BF981 N
Traes_2BS_736EF207B1 Triticum aestivum Traes_2BS_736EF207B1 N
Traes_2DS_3B4535629 Triticum aestivum Traes_2DS_3B4535629 N