Alligator_sinensis_CCG011265.1 (Alligator sinensis)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00096 (zf-C2H2) IPR007087 Alligator_sinensis_CCG011265.1 T133278_2.00 GigaDB (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
ZNF704
M04519_2.00 		Homo sapiens
HRCCGGCCGGYD
HRCCGGCCGGYD		 SELEX
Yin et al.(2017)
ZNF704_FL_HT-SELEX 		0.827 1.000
ZNF704
M04520_2.00 		Homo sapiens
NRCCGGCCGGYN
NRCCGGCCGGYN		 SELEX
Yin et al.(2017)
ZNF704_FL_Methyl-HT-SELEX 		0.827 1.000
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Alligator_sinensis_CCG011265.1 C2H2 ZF 155 180

Links

Other C2H2 ZF family TFs
Other Alligator sinensis TFs

43 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
BGIOSGA005630 Oryza indica BGIOSGA005630 I 0.000
BGIOSGA022580 Oryza indica BGIOSGA022580 I 0.000
Bostr.3288s0094 Boechera stricta Bostr.3288s0094 I 0.000
BRADI1G45170 Brachypodium distachyon BRADI1G45170 N 0.000
BRADI3G59410 Brachypodium distachyon BRADI3G59410 N 0.000
BRADI3G59420 Brachypodium distachyon BRADI3G59420 N 0.000
Cagra.0402s0077 Capsella grandiflora Cagra.0402s0077 I 0.000
Cagra.4153s0001 Capsella grandiflora Cagra.4153s0001 I 0.000
Carubv10011133m.g Capsella rubella Carubv10011133m.g I 0.000
Carubv10021541m.g Capsella rubella Carubv10021541m.g I 0.000
F775_00225 Aegilops tauschii F775_00225 I 0.000
F775_07483 Aegilops tauschii F775_07483 I 0.000
fgenesh1_pg.C_scaffold_2001738 Arabidopsis lyrata fgenesh1_pg.C_scaffold_2001738 I 0.000
GRMZM2G392306 Zea mays GRMZM2G392306 I 0.000
LPERR02G26470 Leersia perrieri LPERR02G26470 N 0.000
LPERR06G07570 Leersia perrieri LPERR06G07570 I 0.000
MDP0000266172 Malus domestica MDP0000266172 I 0.000
mg020279m Mimulus guttatus mg020279m I 0.000
MLOC_12609 Hordeum vulgare MLOC_12609 I 0.000
MLOC_59560 Hordeum vulgare MLOC_59560 I 0.000
OB02G39310 Oryza brachyantha OB02G39310 I 0.000
OB06G17750 Oryza brachyantha OB06G17750 I 0.000
OBART02G32320 Oryza barthii OBART02G32320 I 0.000
OLONG_016325 Oryza longistaminata OLONG_016325 I 0.000
OMERI02G30990 Oryza meridionalis OMERI02G30990 I 0.000
OMERI06G09770 Oryza meridionalis OMERI06G09770 I 0.000
ONIVA06G04700 Oryza nivara ONIVA06G04700 I 0.000
ONIVA06G09450 Oryza nivara ONIVA06G09450 I 0.000
OPUNC02G29870 Oryza punctata OPUNC02G29870 I 0.000
OPUNC06G07940 Oryza punctata OPUNC06G07940 I 0.000
ORGLA02G0278600 Oryza glaberrima ORGLA02G0278600 I 0.000
ORGLA06G0077700 Oryza glaberrima ORGLA06G0077700 I 0.000
ORUFI02G34010 Oryza rufipogon ORUFI02G34010 I 0.000
ORUFI06G08510 Oryza rufipogon ORUFI06G08510 I 0.000
OS06G0228950 Oryza sativa OS06G0228950 I 0.000
Pavir.Aa00708 Panicum virgatum Pavir.Aa00708 I 0.000
Pavir.Ab02992 Panicum virgatum Pavir.Ab02992 I 0.000
Pavir.Da01160 Panicum virgatum Pavir.Da01160 I 0.000
Pavir.J13146 Panicum virgatum Pavir.J13146 I 0.000
Pavir.J17077 Panicum virgatum Pavir.J17077 N 0.000
PDK_20s1383532g001 Phoenix dactylifera PDK_20s1383532g001 I 0.000
RKD2 Arabidopsis thaliana AT1G74480 D 0.000
Sb04g028040 Sorghum bicolor Sb04g028040 N 0.000
Sb10g008120 Sorghum bicolor Sb10g008120 I 0.000
Si008273m.g Setaria italica Si008273m.g I 0.000
Si019159m.g Setaria italica Si019159m.g N 0.000
TCM_014009 Theobroma cacao TCM_014009 I 0.000
Thhalv10019554m.g Eutrema salsugineum Thhalv10019554m.g I 0.000
Traes_6BL_301505440 Triticum aestivum Traes_6BL_301505440 I 0.000
Traes_6DL_8ECBBC867 Triticum aestivum Traes_6DL_8ECBBC867 I 0.000
Traes_7DS_405F08A53 Triticum aestivum Traes_7DS_405F08A53 I 0.000
TRIUR3_19503 Triticum urartu TRIUR3_19503 I 0.000