Cmyd_10013310 (Chelonia mydas)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00096 (zf-C2H2) IPR007087 Cmyd_10013310 T134384_2.00 GigaDB (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
FEZF1
M08307_2.00 		Homo sapiens
NNBTGYYYTTTTNNN
NNNAAAARRRCAVNN		 ChIP-seq
Schmitges et al.(2016)
A0PJY2_1-5.RCADE 		0.824 0.971
FEZF1
M08889_2.00 		Homo sapiens
DYTGYYCWTTTN
NAAAWGRRCARH		 Misc
Kulakovskiy et al.(2013)
FEZF1_HUMAN.H11MO.0.C 		0.824 0.971
erm
M03686_2.00 		Drosophila melanogaster
TGATTGCTCWTTT
AAAWGAGCAATCA		 SELEX
Nitta et al.(2015)
CG31670_1 		0.804 0.906
erm
M06128_2.00 		Drosophila melanogaster
KWTGYKCWTTT
AAAWGMRCAWM		 B1H
Zhu et al.(2011)
CG31670_SANGER_5_FBgn0031375 		0.804 0.906
erm
M06129_2.00 		Drosophila melanogaster
BBRTTGCTCWTTTBN
NVAAAWGAGCAAYVV		 B1H
Zhu et al.(2011)
CG31670_SOLEXA_5_FBgn0031375 		0.804 0.906
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Cmyd_10013310 C2H2 ZF 255 277
Cmyd_10013310 C2H2 ZF 283 305
Cmyd_10013310 C2H2 ZF 311 333
Cmyd_10013310 C2H2 ZF 339 361
Cmyd_10013310 C2H2 ZF 367 389
Cmyd_10013310 C2H2 ZF 395 418

Links

Other C2H2 ZF family TFs
Other Chelonia mydas TFs

166 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
30138.m004071 Ricinus communis 30138.m004071 I 0.000
BGIOSGA005630 Oryza indica BGIOSGA005630 I 0.000
BGIOSGA022580 Oryza indica BGIOSGA022580 I 0.000
Bostr.3288s0094 Boechera stricta Bostr.3288s0094 I 0.000
BRADI1G45170 Brachypodium distachyon BRADI1G45170 N 0.000
BRADI3G59410 Brachypodium distachyon BRADI3G59410 N 0.000
BRADI3G59420 Brachypodium distachyon BRADI3G59420 N 0.000
Cagra.0402s0077 Capsella grandiflora Cagra.0402s0077 I 0.000
Cagra.4153s0001 Capsella grandiflora Cagra.4153s0001 I 0.000
Carubv10011133m.g Capsella rubella Carubv10011133m.g I 0.000
Carubv10021541m.g Capsella rubella Carubv10021541m.g I 0.000
F775_00225 Aegilops tauschii F775_00225 I 0.000
F775_07483 Aegilops tauschii F775_07483 I 0.000
fgenesh1_pg.C_scaffold_2001738 Arabidopsis lyrata fgenesh1_pg.C_scaffold_2001738 I 0.000
fgenesh2_kg.1__2057__AT1G18790.1 Arabidopsis lyrata fgenesh2_kg.1__2057__AT1G18790.1 I 0.000
GLYMA04G33516 Glycine max GLYMA04G33516 I 0.000
GRMZM2G392306 Zea mays GRMZM2G392306 I 0.000
LPERR02G26470 Leersia perrieri LPERR02G26470 N 0.000
LPERR06G07570 Leersia perrieri LPERR06G07570 I 0.000
MDP0000266172 Malus domestica MDP0000266172 I 0.000
mg020279m Mimulus guttatus mg020279m I 0.000
MLOC_12609 Hordeum vulgare MLOC_12609 I 0.000
MLOC_59560 Hordeum vulgare MLOC_59560 I 0.000
MTR_3g435550 Medicago truncatula MTR_3g435550 I 0.000
OB02G39310 Oryza brachyantha OB02G39310 I 0.000
OB06G17750 Oryza brachyantha OB06G17750 I 0.000
OBART02G32320 Oryza barthii OBART02G32320 I 0.000
OGLUM02G32960 Oryza glumaepatula OGLUM02G32960 I 0.000
OLONG_016325 Oryza longistaminata OLONG_016325 I 0.000
OMERI06G09770 Oryza meridionalis OMERI06G09770 I 0.000
ONIVA06G04700 Oryza nivara ONIVA06G04700 I 0.000
ONIVA06G09450 Oryza nivara ONIVA06G09450 I 0.000
OPUNC02G29870 Oryza punctata OPUNC02G29870 I 0.000
OPUNC06G07940 Oryza punctata OPUNC06G07940 I 0.000
ORGLA02G0278600 Oryza glaberrima ORGLA02G0278600 I 0.000
ORGLA06G0077700 Oryza glaberrima ORGLA06G0077700 I 0.000
ORUFI02G34010 Oryza rufipogon ORUFI02G34010 I 0.000
ORUFI06G08510 Oryza rufipogon ORUFI06G08510 I 0.000
OS06G0228950 Oryza sativa OS06G0228950 I 0.000
Pavir.Aa00708 Panicum virgatum Pavir.Aa00708 I 0.000
Pavir.Ab02992 Panicum virgatum Pavir.Ab02992 I 0.000
Pavir.Da01160 Panicum virgatum Pavir.Da01160 I 0.000
Pavir.J13146 Panicum virgatum Pavir.J13146 I 0.000
Pavir.J17077 Panicum virgatum Pavir.J17077 N 0.000
PDK_20s1383532g001 Phoenix dactylifera PDK_20s1383532g001 I 0.000
RKD1 Arabidopsis thaliana AT1G18790 I 0.000
RKD2 Arabidopsis thaliana AT1G74480 D 0.000
Sb04g028040 Sorghum bicolor Sb04g028040 N 0.000
Sb10g008120 Sorghum bicolor Sb10g008120 I 0.000
Si008273m.g Setaria italica Si008273m.g I 0.000
Si019159m.g Setaria italica Si019159m.g N 0.000
TCM_014009 Theobroma cacao TCM_014009 I 0.000
Thhalv10019554m.g Eutrema salsugineum Thhalv10019554m.g I 0.000
Traes_6BL_301505440 Triticum aestivum Traes_6BL_301505440 I 0.000
Traes_6DL_8ECBBC867 Triticum aestivum Traes_6DL_8ECBBC867 I 0.000
Traes_7DS_405F08A53 Triticum aestivum Traes_7DS_405F08A53 I 0.000
TRIUR3_19503 Triticum urartu TRIUR3_19503 I 0.000