CIS-BP Database: Catalog of Inferred Sequence Binding Preferences

TF Information

Gfo_R006245 *(Geospiza fortis)* C2H2 ZF
Pfam ID	Interpro ID	Gene ID	CIS-BP ID	Sequence source
PF00096 (zf-C2H2)	IPR007087	Gfo_R006245	T135737_2.00	GigaDB (2015-Oct-22)
Directly determined binding motifs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
No direct experiments
Motifs from related TFs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
KLF4 M04463_2.00	Homo sapiens	NVCCACRCCCH	DGGGYGTGGBN	SELEX Yin et al.(2017) KLF4_eDBD_HT-SELEX	0.823	0.986
KLF4 M08091_2.00	Homo sapiens	MCACACCCWNN	NNWGGGTGTGK	ChIP-seq Mathelier et al.(2014) MA0039.3	0.823	0.986
Klf4 M08021_2.00	Mus musculus	VRCCMCRCCCH	DGGGYGKGGYB	ChIP-seq Chen et al.(2011) SRP000217_Klf4	0.823	0.986
KLF4 M08243_2.00	Homo sapiens	RCCMCRCCCH	DGGGYGKGGY	ChIP-seq Najafabadi et al.(2015b) KLF14	0.823	0.986
KLF4 M08894_2.00	Homo sapiens	RCCMCRCCCH	DGGGYGKGGY	Misc Kulakovskiy et al.(2013) KLF4_HUMAN.H11MO.0.A	0.823	0.986
Klf4 M08964_2.00	Mus musculus	GCCMCRCCCWBYBBN	NVVRVWGGGYGKGGC	Misc Kulakovskiy et al.(2013) KLF4_MOUSE.H11MO.0.A	0.823	0.986
KLF4 M10217_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$GKLF_02	0.823	0.986
KLF4 M10218_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$GKLF_Q3_01	0.823	0.986
KLF4 M10219_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$GKLF_Q3	0.823	0.986
KLF4 M10220_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$GKLF_Q4	0.823	0.986
KLF4 M04464_2.00	Homo sapiens	NVCCMCRCCCN	NGGGYGKGGBN	SELEX Yin et al.(2017) KLF4_eDBD_Methyl-HT-SELEX	0.823	0.986
KLF2 M04455_2.00	Homo sapiens	NVCCMCRCCCH	DGGGYGKGGBN	SELEX Yin et al.(2017) KLF2_eDBD_HT-SELEX	0.813	0.942
KLF2 M10210_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$LKLF_Q3	0.813	0.942
KLF2 M10211_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$LKLF_Q6	0.813	0.942
KLF2 M04456_2.00	Homo sapiens	NVCCMCRCCCN	NGGGYGKGGBN	SELEX Yin et al.(2017) KLF2_eDBD_Methyl-HT-SELEX	0.813	0.942
KLF1 M00226_2.00	Homo sapiens	CMCGCCCM	KGGGCGKG	PBM Barrera et al.(2016) KLF1_REF	0.784	0.884
KLF1 M08293_2.00	Homo sapiens	NVNNNRCCMCRCCCH	DGGGYGKGGYNNNBN	ChIP-seq Schmitges et al.(2016) Q13351.MEME	0.784	0.884
KLF1 M08871_2.00	Homo sapiens	SVNDGCCMCRCCCH	DGGGYGKGGCHNBS	Misc Kulakovskiy et al.(2013) KLF1_HUMAN.H11MO.0.A	0.784	0.884
KLF1 M10163_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$EKLF_Q5_01	0.784	0.884
KLF1 M10164_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$EKLF_Q5	0.784	0.884
KLF1 M00224_2.00	Homo sapiens	YMCGCCCH	DGGGCGKR	PBM Barrera et al.(2016) KLF1_H299Y	0.784	0.870
KLF5 M04410_2.00	Homo sapiens	NMCACRCCCH	DGGGYGTGKN	SELEX Yin et al.(2017) KLF5_eDBD_HT-SELEX	0.784	0.841
KLF5 M08086_2.00	Homo sapiens	BCCMCDCCCH	DGGGHGKGGV	ChIP-seq Mathelier et al.(2014) MA0599.1	0.784	0.841
KLF5 M08868_2.00	Homo sapiens	NHVNRCCMCDCCCH	DGGGHGKGGYNBDN	Misc Kulakovskiy et al.(2013) KLF5_HUMAN.H11MO.0.A	0.784	0.841
Klf5 M08965_2.00	Mus musculus	KCCMCDCCCHBBBCH	DGVVVDGGGHGKGGM	Misc Kulakovskiy et al.(2013) KLF5_MOUSE.H11MO.0.A	0.784	0.841
KLF5 M09502_2.00	Homo sapiens	GCCMCRCCCH	DGGGYGKGGC	Misc Heinz et al.(2010) LoVo-KLF5_GSE49402	0.784	0.841
KLF5 M10149_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$BTEB2_Q3_01	0.784	0.841
KLF5 M10150_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$BTEB2_Q3	0.784	0.841
KLF5 M04411_2.00	Homo sapiens	NMCACRCCYH	DRGGYGTGKN	SELEX Yin et al.(2017) KLF5_eDBD_Methyl-HT-SELEX	0.784	0.841
KLF3 M04418_2.00	Homo sapiens	RRCCRCGCCCH	DGGGCGYGGYY	SELEX Yin et al.(2017) KLF3_FL_HT-SELEX	0.784	0.826
KLF3 M08876_2.00	Homo sapiens	NSNNVCCMCRCCCHBBBBN	NVVVVDGGGYGKGGBNNSN	Misc Kulakovskiy et al.(2013) KLF3_HUMAN.H11MO.0.B	0.784	0.826
Klf3 M08982_2.00	Mus musculus	NSNNVCCMCRCCCHBBBBN	NVVVVDGGGYGKGGBNNSN	Misc Kulakovskiy et al.(2013) KLF3_MOUSE.H11MO.0.A	0.784	0.826
KLF3 M10172_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$KLF3_Q3_01	0.784	0.826
KLF3 M10173_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$KLF3_Q3	0.784	0.826
KLF3 M04419_2.00	Homo sapiens	DRCCACGCCCH	DGGGCGTGGYH	SELEX Yin et al.(2017) KLF3_FL_Methyl-HT-SELEX_1	0.784	0.826
KLF3 M04420_2.00	Homo sapiens	RRSCGCARCCCN	NGGGYTGCGSYY	SELEX Yin et al.(2017) KLF3_FL_Methyl-HT-SELEX_2	0.784	0.826
Klf1 M08099_2.00	Mus musculus	NRCCACACCCW	WGGGTGTGGYN	ChIP-seq Mathelier et al.(2014) MA0493.1	0.781	0.855
Klf1 M09008_2.00	Mus musculus	MVMNSCCMCRCCCH	DGGGYGKGGSNKBK	Misc Kulakovskiy et al.(2013) KLF1_MOUSE.H11MO.0.A	0.781	0.855
Klf1 M09516_2.00	Mus musculus	DRCCACACCCWN	NWGGGTGTGGYH	Misc Heinz et al.(2010) Erythrocyte-Klf1_GSE20478	0.781	0.855
Klf7 M00134_2.00	Mus musculus	NHHMCRCCCH	DGGGYGKDDN	PBM Badis et al.(2009) Klf7_0974	0.765	0.812
luna M03704_2.00	Drosophila melanogaster	RCCACRCCCH	DGGGYGTGGY	SELEX Nitta et al.(2015) luna_1	0.765	0.812
luna M06163_2.00	Drosophila melanogaster	RRMHMCRCCC	GGGYGKDKYY	B1H Zhu et al.(2011) luna_SANGER_5_FBgn0040765	0.765	0.812
luna M06164_2.00	Drosophila melanogaster	DRCCMCGCCCHNNN	NNNDGGGCGKGGYH	B1H Zhu et al.(2011) luna_SOLEXA_5_FBgn0040765	0.765	0.812
KLF7 M08298_2.00	Homo sapiens	VVCHMCGCCCH	DGGGCGKDGBB	ChIP-seq Schmitges et al.(2016) O75840.MEME	0.765	0.812
KLF6 M04400_2.00	Homo sapiens	NVMCACRCCCH	DGGGYGTGKBN	SELEX Yin et al.(2017) KLF6_eDBD_HT-SELEX	0.765	0.797
KLF6 M08857_2.00	Homo sapiens	BYBYVNBCYMCDCCCYBBN	NVVRGGGHGKRGVNBRVRV	Misc Kulakovskiy et al.(2013) KLF6_HUMAN.H11MO.0.A	0.765	0.797
Klf6 M08962_2.00	Mus musculus	BYBYVNBCYMCDCCCYBBN	NVVRGGGHGKRGVNBRVRV	Misc Kulakovskiy et al.(2013) KLF6_MOUSE.H11MO.0.B	0.765	0.797
KLF6 M10113_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$CPBP_Q6	0.765	0.797
KLF6 M04401_2.00	Homo sapiens	NRCCACGCCCH	DGGGCGTGGYN	SELEX Yin et al.(2017) KLF6_eDBD_Methyl-HT-SELEX	0.765	0.797
Klf12 M00787_2.00	Mus musculus	NNHMCRCCCH	DGGGYGKDNN	PBM Weirauch et al.(2013) pTH0977	0.762	0.812
Klf12 M02937_2.00	Mus musculus	GRCCACGCCCWHHHN	NDDDWGGGCGTGGYC	SELEX Jolma et al.(2013) Klf12_1	0.762	0.812
KLF12 M04430_2.00	Homo sapiens	DRCCACGCCCH	DGGGCGTGGYH	SELEX Yin et al.(2017) KLF12_FL_HT-SELEX	0.762	0.812
KLF12 M08299_2.00	Homo sapiens	SBNVGCCMCGCCCHB	VDGGGCGKGGCBNVS	ChIP-seq Schmitges et al.(2016) Q9Y4X4.MEME	0.762	0.812
KLF12 M08879_2.00	Homo sapiens	GCCCCGCCCYB	VRGGGCGGGGC	Misc Kulakovskiy et al.(2013) KLF12_HUMAN.H11MO.0.C	0.762	0.812
KLF12 M10186_2.00	Homo sapiens	HMYACDG	CHGTRKD	Transfac Matys et al.(2006) V$AP2REP_01	0.762	0.812
KLF12 M04431_2.00	Homo sapiens	RGSCGACGCCCN	NGGGCGTCGSCY	SELEX Yin et al.(2017) KLF12_FL_Methyl-HT-SELEX_1	0.762	0.812
KLF12 M04432_2.00	Homo sapiens	NRCCACGCCCH	DGGGCGTGGYN	SELEX Yin et al.(2017) KLF12_FL_Methyl-HT-SELEX_2	0.762	0.812
dar1 M06171_2.00	Drosophila melanogaster	RMCACACCCWH	DWGGGTGTGKY	B1H Zhu et al.(2011) CG12029_SANGER_10_FBgn0035454	0.758	0.768
dar1 M06172_2.00	Drosophila melanogaster	NNNRCCACRCCCHNN	NNDGGGYGTGGYNNN	B1H Zhu et al.(2011) CG12029_SOLEXA_5_FBgn0035454	0.758	0.768
For this family, TFs with SR scores > 0.755* will likely have a similar motif*

DNA Binding Domains

Protein ID	Domain	From	To	Sequence
Gfo_R006245	C2H2 ZF	113	137	HTCDYAGCGKTYTKSSHLKAHLRTH
Gfo_R006245	C2H2 ZF	143	167	YHCDWEGCGWKFARSDELTRHYRKH
Gfo_R006245	C2H2 ZF	173	195	FQCQRCDRAFSRSDHLALHMKRH

Links
Other C2H2 ZF family TFs
Other *Geospiza fortis* TFs

668 Related TFs

Name	Species	Gene ID	Motif Evidence	SR Score	Action
A_07022	Schistosoma haematobium	A_07022	N
ENSMMUP00000041119	Macaca fascicularis	ENSMMUP00000041119	N
ENSMPUG00000015119	Mustela putorius furo	ENSMPUG00000015119	N
ENSOCUG00000022728	Oryctolagus cuniculus	ENSOCUG00000022728	N
ENSOCUG00000024061	Oryctolagus cuniculus	ENSOCUG00000024061	N
ENSTGUG00000006267	Taeniopygia guttata	ENSTGUG00000006267	N
Gfo_R010508	Geospiza fortis	Gfo_R010508	N
HDID_0000439701	Hymenolepis diminuta	HDID_0000439701	N
HMGB1	Tupaia belangeri	ENSTBEG00000013046	N
SPU_027981	Strongylocentrotus purpuratus	SPU_027981	N
TASK_0000901701	Taenia asiatica	TASK_0000901701	N
TC007692	Tribolium castaneum	TC007692	N

Gfo_R006245 (Geospiza fortis) C2H2 ZF

TF Information

Directly determined binding motifs

Motifs from related TFs

DNA Binding Domains

Links

668 Related TFs

Gfo_R006245 **(Geospiza fortis)
C2H2 ZF**