Gfo_R016268 (Geospiza fortis)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00096 (zf-C2H2) IPR007087 Gfo_R016268 T135892_2.00 GigaDB (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
IKZF3
M08320_2.00 		Homo sapiens
TTCCCNNSB
VSNNGGGAA		 ChIP-seq
Schmitges et al.(2016)
Q9UKT9_2-4.RCADE 		0.809 0.956
IKZF1
M08939_2.00 		Homo sapiens
HYTCCCAV
BTGGGARD		 Misc
Kulakovskiy et al.(2013)
IKZF1_HUMAN.H11MO.0.C 		0.793 0.879
Ikzf1
M08969_2.00 		Mus musculus
HYTCCCAV
BTGGGARD		 Misc
Kulakovskiy et al.(2013)
IKZF1_MOUSE.H11MO.0.C 		0.793 0.879
IKZF1
M10301_2.00 		Homo sapiens
NHBYGGGAAYRYB
VRYRTTCCCRVDN		 Transfac
Matys et al.(2006)
V$IK1_01 		0.793 0.879
IKZF1
M10302_2.00 		Homo sapiens
BNNWTCCCRNNN
NNNYGGGAWNNV		 Transfac
Matys et al.(2006)
V$IK2_01 		0.793 0.879
IKZF1
M10303_2.00 		Homo sapiens
KNYHGGGAAYRYY
RRYRTTCCCDRNM		 Transfac
Matys et al.(2006)
V$IK3_01 		0.793 0.879
IKZF1
M10304_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$IK_Q5_01 		0.793 0.879
IKZF1
M10305_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$IK_Q5 		0.793 0.879
IKZF1
M10306_2.00 		Homo sapiens
YYTCCCARA
TYTGGGARR		 Transfac
Matys et al.(2006)
V$LYF1_01 		0.793 0.879
IKZF2
M10105_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$HELIOSA_01 		0.773 0.846
IKZF2
M10106_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$HELIOSA_02 		0.773 0.846
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Gfo_R016268 C2H2 ZF 8 30
Gfo_R016268 C2H2 ZF 36 58
Gfo_R016268 C2H2 ZF 64 86
Gfo_R016268 C2H2 ZF 92 113

Links

Other C2H2 ZF family TFs
Other Geospiza fortis TFs

169 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Bo3g013440 Brassica oleracea Bo3g013440 N
Bostr.2570s0035 Boechera stricta Bostr.2570s0035 N
Bostr.26527s0315 Boechera stricta Bostr.26527s0315 N
Cagra.0263s0023 Capsella grandiflora Cagra.0263s0023 N
Cagra.3793s0006 Capsella grandiflora Cagra.3793s0006 N
Carubv10000255m.g Capsella rubella Carubv10000255m.g N
Carubv10013017m.g Capsella rubella Carubv10013017m.g N
cassava1998.valid.m1 Manihot esculenta cassava1998.valid.m1 N
Ciclev10004376m.g Citrus clementina Ciclev10004376m.g N
Cucsa.253860 Cucumis sativus Cucsa.253860 N
evm.TU.supercontig_16.55 Carica papaya evm.TU.supercontig_16.55 N
FRS12 Arabidopsis thaliana AT5G18960 N
FRS7 Arabidopsis thaliana AT3G06250 N
gene06133-v1.0-hybrid Fragaria vesca gene06133-v1.0-hybrid N
GLYMA13G28230 Glycine max GLYMA13G28230 N
GLYMA15G10830 Glycine max GLYMA15G10830 N
Gorai.006G255400 Gossypium raimondii Gorai.006G255400 N
MDP0000254218 Malus domestica MDP0000254218 N
MDP0000295749 Malus domestica MDP0000295749 N
mgf010461m Mimulus guttatus mgf010461m N
mgf011099m Mimulus guttatus mgf011099m N
orange1.1g004138m.g Citrus sinensis orange1.1g004138m.g N
PK22885.1 Cannabis sativa PK22885.1 N
Pm008044 Prunus mume Pm008044 N
POPTR_0010s03000 Populus trichocarpa POPTR_0010s03000 N
PRUPE_ppa001884mg Prunus persica PRUPE_ppa001884mg N
SapurV1A.0152s0560 Salix purpurea SapurV1A.0152s0560 N
SapurV1A.0407s0270 Salix purpurea SapurV1A.0407s0270 N
SapurV1A.1026s0020 Salix purpurea SapurV1A.1026s0020 N
Solyc10g084220.1 Solanum lycopersicum Solyc10g084220.1 N
TCM_021065 Theobroma cacao TCM_021065 N
Thhalv10012731m.g Eutrema salsugineum Thhalv10012731m.g N
Thhalv10020128m.g Eutrema salsugineum Thhalv10020128m.g N
VIT_05s0020g02450 Vitis vinifera VIT_05s0020g02450 N