Sakowv30026316m.g (Saccoglossus kowalevskii)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00096 (zf-C2H2) IPR007087 Sakowv30026316m.g T142361_2.00 JGI:Metazome (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
BCL11B
M04453_2.00 		Homo sapiens
GTGAACGBNDNNVCTACAC
GTGTAGBNNHNVCGTTCAC		 SELEX
Yin et al.(2017)
BCL11B_eDBD_HT-SELEX 		0.820 0.930
BCL11B
M04454_2.00 		Homo sapiens
GTGAACGBNDNHVCTACAC
GTGTAGBDNHNVCGTTCAC		 SELEX
Yin et al.(2017)
BCL11B_eDBD_Methyl-HT-SELEX 		0.820 0.930
BCL11A
M07926_2.00 		Homo sapiens
BTYTCASTTCCYYHH
DDRRGGAASTGARAV		 ChIP-seq
Gerstein et al.(2012)
GM12878_BCL11A_HudsonAlpha 		0.803 0.904
BCL11A
M08881_2.00 		Homo sapiens
BHBYCABTTCCYBHNYN
NRNDVRGGAAVTGRVDV		 Misc
Kulakovskiy et al.(2013)
BC11A_HUMAN.H11MO.0.A 		0.803 0.904
BCL11A
M10187_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$BCL11A_02 		0.803 0.904
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
23915759_peptide C2H2 ZF 461 482
23915759_peptide C2H2 ZF 488 510
23915759_peptide C2H2 ZF 805 827
23915759_peptide C2H2 ZF 833 855
23915759_peptide C2H2 ZF 863 886
23915760_peptide C2H2 ZF 460 481
23915760_peptide C2H2 ZF 487 509
23915760_peptide C2H2 ZF 804 826
23915760_peptide C2H2 ZF 832 854
23915760_peptide C2H2 ZF 862 885
23915761_peptide C2H2 ZF 415 436
23915761_peptide C2H2 ZF 442 464
23915761_peptide C2H2 ZF 759 781
23915761_peptide C2H2 ZF 787 809
23915761_peptide C2H2 ZF 817 840

Links

Other C2H2 ZF family TFs
Other Saccoglossus kowalevskii TFs

130 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Aan_R000616 Calypte anna Aan_R000616 I 0.820
Aan_R006276 Calypte anna Aan_R006276 I 0.803
AARA004246 Anopheles arabiensis AARA004246 N 0.756
ACYPI007319 Acyrthosiphon pisum ACYPI007319 I 0.760
Afo_R004626 Aptenodytes forsteri Afo_R004626 I 0.820
Afo_R011357 Aptenodytes forsteri Afo_R011357 I 0.803
Alligator_sinensis_CCG008166.1 Alligator sinensis Alligator_sinensis_CCG008166.1 I 0.803
AMEC015245 Anopheles melas AMEC015245 I 0.759
ASIS012904 Anopheles sinensis ASIS012904 N 0.757
BCL11A Anolis carolinensis ENSACAG00000015159 I 0.803
BCL11A Callithrix jacchus ENSCJAG00000009226 I 0.803
BCL11A Cavia porcellus ENSCPOG00000007587 I 0.803
BCL11A Dasypus novemcinctus ENSDNOG00000019842 I 0.803
Bcl11a Dipodomys ordii ENSDORG00000010064 I 0.803
BCL11A Erinaceus europaeus ENSEEUG00000010958 I 0.803
BCL11A Felis catus ENSFCAG00000027154 I 0.803
BCL11A Homo sapiens ENSG00000119866 D 0.803
BCL11A Gorilla gorilla ENSGGOG00000007337 I 0.803
BCL11A Loxodonta africana ENSLAFG00000003101 I 0.803
BCL11A Meleagris gallopavo ENSMGAG00000013042 I 0.803
BCL11A Microcebus murinus ENSMICG00000015052 I 0.803
Bcl11a Mus musculus ENSMUSG00000000861 I 0.803
BCL11A Ornithorhynchus anatinus ENSOANG00000012402 I 0.803
BCL11A Oryctolagus cuniculus ENSOCUG00000023948 I 0.803
BCL11A Pteropus vampyrus ENSPVAG00000000042 I 0.803
Bcl11a Rattus norvegicus ENSRNOG00000007049 I 0.803
BCL11A Sus scrofa ENSSSCG00000008392 I 0.803
BCL11A Taeniopygia guttata ENSTGUG00000006790 I 0.803
BCL11A Tursiops truncatus ENSTTRG00000006191 I 0.803
BCL11A Vicugna pacos ENSVPAG00000000491 I 0.803
bcl11a Xenopus tropicalis XB-GENE-486641 I 0.803
bcl11aa Danio rerio ENSDARG00000061352 I 0.813
bcl11aa Gasterosteus aculeatus ENSGACG00000013419 I 0.797
bcl11aa Oryzias latipes ENSORLG00000001704 I 0.801
bcl11aa Takifugu rubripes ENSTRUG00000003815 I 0.801
bcl11ab Danio rerio ENSDARG00000063153 I 0.813
bcl11ab Gasterosteus aculeatus ENSGACG00000019222 I 0.811
bcl11ab Oryzias latipes ENSORLG00000013169 I 0.813
bcl11ab Tetraodon nigroviridis ENSTNIG00000012076 I 0.813
bcl11ab Takifugu rubripes ENSTRUG00000013751 I 0.813
BCL11B Bos taurus ENSBTAG00000018019 I 0.820
BCL11B Canis familiaris ENSCAFG00000017809 I 0.820
BCL11B Callithrix jacchus ENSCJAG00000006713 I 0.820
BCL11B Dasypus novemcinctus ENSDNOG00000012677 I 0.820
BCL11B Homo sapiens ENSG00000127152 D 0.820
BCL11B Gorilla gorilla ENSGGOG00000001232 I 0.820
BCL11B Loxodonta africana ENSLAFG00000009254 I 0.820
BCL11B Macaca mulatta ENSMMUG00000003261 I 0.820
BCL11B Monodelphis domestica ENSMODG00000012964 I 0.820
Bcl11b Mus musculus ENSMUSG00000048251 I 0.820
BCL11B Ornithorhynchus anatinus ENSOANG00000014770 I 0.820
BCL11B Otolemur garnettii ENSOGAG00000033204 I 0.820
BCL11B Pan troglodytes ENSPTRG00000006707 I 0.820
BCL11B Pteropus vampyrus ENSPVAG00000015516 I 0.820
Bcl11b Rattus norvegicus ENSRNOG00000005776 I 0.820
BCL11B Sus scrofa ENSSSCG00000002507 I 0.820
BCL11B Taeniopygia guttata ENSTGUG00000012711 I 0.820
BCL11B Tursiops truncatus ENSTTRG00000012140 I 0.815
bcl11ba Gasterosteus aculeatus ENSGACG00000013118 I 0.812
bcl11ba Oryzias latipes ENSORLG00000010826 I 0.815
bcl11ba Tetraodon nigroviridis ENSTNIG00000008283 I 0.815
bcl11ba Takifugu rubripes ENSTRUG00000003531 I 0.815
BGLB012676 Biomphalaria glabrata BGLB012676 I 0.764
CapteG65449 Capitella teleta CapteG65449 I 0.760
Cmyd_10008592 Chelonia mydas Cmyd_10008592 I 0.803
Cmyd_10012109 Chelonia mydas Cmyd_10012109 I 0.820
ENSACAG00000013085 Anolis carolinensis ENSACAG00000013085 I 0.820
ENSAMEG00000015813 Ailuropoda melanoleuca ENSAMEG00000015813 I 0.803
ENSAMXG00000004597 Astyanax mexicanus ENSAMXG00000004597 I 0.801
ENSAMXG00000015839 Astyanax mexicanus ENSAMXG00000015839 I 0.820
ENSAMXG00000018130 Astyanax mexicanus ENSAMXG00000018130 I 0.816
ENSAPLG00000006283 Anas platyrhynchos ENSAPLG00000006283 I 0.820
ENSAPLG00000007735 Anas platyrhynchos ENSAPLG00000007735 I 0.803
ENSBTAP00000023987-D2 Bos grunniens ENSBTAP00000023987-D2 I 0.803
ENSCPOG00000009946 Cavia porcellus ENSCPOG00000009946 I 0.820
ENSCSAG00000010477 Chlorocebus sabaeus ENSCSAG00000010477 I 0.820
ENSFALG00000011123 Ficedula albicollis ENSFALG00000011123 I 0.803
ENSGALG00000007866 Gallus gallus ENSGALG00000007866 I 0.803
ENSGALG00000011127 Gallus gallus ENSGALG00000011127 I 0.820
ENSGALG00000028278 Gallus gallus ENSGALG00000028278 I 0.820
ENSGMOG00000012414 Gadus morhua ENSGMOG00000012414 I 0.812
ENSGMOG00000015842 Gadus morhua ENSGMOG00000015842 I 0.809
ENSLACG00000003560 Latimeria chalumnae ENSLACG00000003560 I 0.803
ENSLOCG00000008679 Lepisosteus oculatus ENSLOCG00000008679 I 0.815
ENSLOCG00000016135 Lepisosteus oculatus ENSLOCG00000016135 I 0.811
ENSMEUG00000001829 Macropus eugenii ENSMEUG00000001829 I 0.803
ENSMMUG00000011303 Macaca mulatta ENSMMUG00000011303 I 0.803
ENSNLEG00000000711 Nomascus leucogenys ENSNLEG00000000711 I 0.820
ENSOCUG00000024296 Oryctolagus cuniculus ENSOCUG00000024296 I 0.809
ENSONIG00000001067 Oreochromis niloticus ENSONIG00000001067 I 0.819
ENSONIG00000002906 Oreochromis niloticus ENSONIG00000002906 I 0.801
ENSONIG00000011060 Oreochromis niloticus ENSONIG00000011060 I 0.815
ENSONIG00000018855 Oreochromis niloticus ENSONIG00000018855 I 0.813
ENSP00000338774 Macaca fascicularis ENSP00000338774 I 0.803
ENSP00000349723 Macaca fascicularis ENSP00000349723 I 0.816
ENSPANG00000004313 Papio anubis ENSPANG00000004313 I 0.820
ENSPFOG00000003609 Poecilia formosa ENSPFOG00000003609 I 0.816
ENSPFOG00000007224 Poecilia formosa ENSPFOG00000007224 I 0.812
ENSPFOG00000007302 Poecilia formosa ENSPFOG00000007302 I 0.813
ENSPFOG00000019062 Poecilia formosa ENSPFOG00000019062 I 0.801
ENSPPYG00000006131 Pongo abelii ENSPPYG00000006131 I 0.820
ENSPSIG00000013079 Pelodiscus sinensis ENSPSIG00000013079 I 0.820
ENSPSIG00000013644 Pelodiscus sinensis ENSPSIG00000013644 I 0.803
ENSSHAG00000009291 Sarcophilus harrisii ENSSHAG00000009291 I 0.820
ENSSHAG00000015804 Sarcophilus harrisii ENSSHAG00000015804 I 0.803
ENSSTOG00000004523 Ictidomys tridecemlineatus ENSSTOG00000004523 I 0.803
ENSSTOG00000021531 Ictidomys tridecemlineatus ENSSTOG00000021531 I 0.820
ENSTSYG00000009153 Tarsius syrichta ENSTSYG00000009153 I 0.803
ENSXMAG00000007242 Xiphophorus maculatus ENSXMAG00000007242 I 0.799
ENSXMAG00000019910 Xiphophorus maculatus ENSXMAG00000019910 I 0.816
ENSXMAG00000020344 Xiphophorus maculatus ENSXMAG00000020344 I 0.812
Gfo_R006733 Geospiza fortis Gfo_R006733 I 0.820
Gfo_R008167 Geospiza fortis Gfo_R008167 I 0.803
HHAL008065-PA Halyomorpha halys HHAL008065-PA I 0.774
im:7142702 Danio rerio ENSDARG00000067727 I 0.816
im:7142702 Gasterosteus aculeatus ENSGACG00000005537 I 0.816
im:7142702 Oryzias latipes ENSORLG00000010488 I 0.818
im:7142702 Tetraodon nigroviridis ENSTNIG00000009693 I 0.806
im:7142702 Takifugu rubripes ENSTRUG00000018074 I 0.819
ISCW016418 Ixodes scapularis ISCW016418 I 0.788
L798_02171 Zootermopsis nevadensis L798_02171 I 0.771
LotgiG139415 Lottia gigantea LotgiG139415 I 0.775
Ocbimv22018271m.g Octopus bimaculoides Ocbimv22018271m.g I 0.802
PHUM606430 Pediculus humanus PHUM606430 I 0.780
Pvit_09536 Pogona vitticeps Pvit_09536 I 0.820
Pvit_18645 Pogona vitticeps Pvit_18645 I 0.803
RPRC001562 Rhodnius prolixus RPRC001562 I 0.776
SMAR003355 Strigamia maritima SMAR003355 I 0.800
SPU_018909 Strongylocentrotus purpuratus SPU_018909 I 0.803