Bostr.3877s0062 (Boechera stricta)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00096 (zf-C2H2) IPR007087 Bostr.3877s0062 T142620_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
YY1
M01443_2.00 		Arabidopsis thaliana
NNNVCWYNN
NNRWGBNNN		 PBM
Najafabadi et al.(2015a)
pTH11160 		0.818 0.974
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Bostr.3877s0062.1.p C2H2 ZF 79 103
Bostr.3877s0062.1.p C2H2 ZF 108 132
Bostr.3877s0062.1.p C2H2 ZF 138 162
Bostr.3877s0062.1.p C2H2 ZF 168 193
Bostr.3877s0062.1.p C2H2 ZF 230 255

Links

Other C2H2 ZF family TFs
Other Boechera stricta TFs

10 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Bo00829s040 Brassica oleracea Bo00829s040 I 0.827
Bo3g023850 Brassica oleracea Bo3g023850 I 0.826
Bra029186 Brassica rapa Bra029186 I 0.826
Bra035726 Brassica rapa Bra035726 I 0.827
Cagra.2657s0002 Capsella grandiflora Cagra.2657s0002 I 0.814
Carubv10001157m.g Capsella rubella Carubv10001157m.g I 0.814
Ca_00041 Cicer arietinum Ca_00041 N 0.759
fgenesh2_kg.6__2821__AT4G06634.1 Arabidopsis lyrata fgenesh2_kg.6__2821__AT4G06634.1 I 0.827
Thhalv10028723m.g Eutrema salsugineum Thhalv10028723m.g I 0.825
YY1 Arabidopsis thaliana AT4G06634 D 0.818