Carubv10018774m.g (Capsella rubella)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00096 (zf-C2H2) IPR007087 Carubv10018774m.g T142734_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
AT3G46070
M06813_2.00 		Arabidopsis thaliana
HYHHYHTCACTYHHH
DDDRAGTGADRDDRD		 Dap-seq
OMalley et al.(2016)
AT3G46070_col_a 		0.802 0.870
ZAT7
M01855_2.00 		Arabidopsis thaliana
NVDBRCACTNNNN
NNNNAGTGYVHBN		 PBM
Weirauch et al.(2014)
pTH7540 		0.793 0.891
AT3G53600
M01856_2.00 		Arabidopsis thaliana
NNHASWN
NWSTDNN		 PBM
Weirauch et al.(2014)
pTH7188 		0.771 0.739
AT3G53600
M00858_2.00 		Arabidopsis thaliana
NNNNRSWN
NWSYNNNN		 PBM
Franco-Zorrilla et al.(2014)
ZAT18 		0.771 0.739
AT5G03510
M00860_2.00 		Arabidopsis thaliana
NNHRSWN
NWSYDNN		 PBM
Franco-Zorrilla et al.(2014)
ZAT14 		0.762 0.717
AT5G04390
M01857_2.00 		Arabidopsis thaliana
NNHRSWN
NWSYDNN		 PBM
Weirauch et al.(2014)
pTH7158 		0.761 0.717
AT5G04390
M06819_2.00 		Arabidopsis thaliana
HHHHWHCACTN
NAGTGDWDDDD		 Dap-seq
OMalley et al.(2016)
At5g04390_col200_a 		0.761 0.717
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Carubv10018774m C2H2 ZF 43 65
Carubv10018774m C2H2 ZF 100 122

Links

Other C2H2 ZF family TFs
Other Capsella rubella TFs

282 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
AT1G50680 Arabidopsis thaliana AT1G50680 I 0.000
AT1G51120 Arabidopsis thaliana AT1G51120 D 0.000
Bo5g081270 Brassica oleracea Bo5g081270 I 0.000
Bo6g022280 Brassica oleracea Bo6g022280 I 0.000
Bo6g022450 Brassica oleracea Bo6g022450 I 0.000
Bo6g022460 Brassica oleracea Bo6g022460 I 0.000
Bo6g024770 Brassica oleracea Bo6g024770 I 0.000
Bostr.26675s0109 Boechera stricta Bostr.26675s0109 I 0.000
Bra018854 Brassica rapa Bra018854 I 0.000
Bra018869 Brassica rapa Bra018869 I 0.000
Bra030458 Brassica rapa Bra030458 I 0.000
Cagra.2093s0004 Capsella grandiflora Cagra.2093s0004 I 0.000
Carubv10011257m.g Capsella rubella Carubv10011257m.g I 0.000
Carubv10011592m.g Capsella rubella Carubv10011592m.g I 0.000
fgenesh2_kg.1__4154__AT1G50680.1 Arabidopsis lyrata fgenesh2_kg.1__4154__AT1G50680.1 I 0.000
fgenesh2_kg.1__4181__AT1G51120.1 Arabidopsis lyrata fgenesh2_kg.1__4181__AT1G51120.1 I 0.000
TCM_040397 Theobroma cacao TCM_040397 I 0.000
Thhalv10012152m.g Eutrema salsugineum Thhalv10012152m.g I 0.000
Thhalv10012161m.g Eutrema salsugineum Thhalv10012161m.g I 0.000
Thhalv10012356m.g Eutrema salsugineum Thhalv10012356m.g I 0.000
Traes_2DL_896E50180 Triticum aestivum Traes_2DL_896E50180 I 0.000