Ciclev10007101m.g (Citrus clementina)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00096 (zf-C2H2) IPR007087 Ciclev10007101m.g T142768_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
ZAT9
M06817_2.00 		Arabidopsis thaliana
YTACTWHH
DDWAGTAR		 Dap-seq
OMalley et al.(2016)
At3g60580_col_a 		0.772 0.717
ZAT4
M01168_2.00 		Arabidopsis thaliana
NNHRSTN
NASYDNN		 PBM
Lambert et al.(2019)
pTH11142 		0.772 0.696
ZAT10
M01852_2.00 		Arabidopsis thaliana
NNHASWN
NWSTDNN		 PBM
Weirauch et al.(2014)
pTH7255 		0.761 0.696
ZAT10
M06799_2.00 		Arabidopsis thaliana
WSHHCACT
AGTGDDSW		 Dap-seq
OMalley et al.(2016)
STZ_colamp_a 		0.761 0.696
ZAT10
M06800_2.00 		Arabidopsis thaliana
YWSHNHCASTN
NASTGDNDSWR		 Dap-seq
OMalley et al.(2016)
STZ_col 		0.761 0.696
AZF2
M01854_2.00 		Arabidopsis thaliana
NASTRNN
NNYASTN		 PBM
Weirauch et al.(2014)
pTH8258 		0.760 0.696
ZAT6
M00861_2.00 		Arabidopsis thaliana
NNHRSTN
NASYDNN		 PBM
Franco-Zorrilla et al.(2014)
ZAT6 		0.760 0.674
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Ciclev10007101m C2H2 ZF 171 193
Ciclev10007101m C2H2 ZF 220 242

Links

Other C2H2 ZF family TFs
Other Citrus clementina TFs

142 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
29820.m001008 Ricinus communis 29820.m001008 I 0.000
Bo1g141310 Brassica oleracea Bo1g141310 I 0.000
Bo2g006960 Brassica oleracea Bo2g006960 I 0.000
Bo3g063910 Brassica oleracea Bo3g063910 I 0.000
Bo5g136930 Brassica oleracea Bo5g136930 I 0.000
Bostr.13129s0423 Boechera stricta Bostr.13129s0423 I 0.000
Bostr.19424s1037 Boechera stricta Bostr.19424s1037 I 0.000
Bra001386 Brassica rapa Bra001386 I 0.000
Bra005852 Brassica rapa Bra005852 I 0.000
Bra029889 Brassica rapa Bra029889 I 0.000
Bra034159 Brassica rapa Bra034159 I 0.000
Cagra.1504s0045 Capsella grandiflora Cagra.1504s0045 I 0.000
Cagra.1655s0066 Capsella grandiflora Cagra.1655s0066 I 0.000
Cagra.7053s0020 Capsella grandiflora Cagra.7053s0020 I 0.000
Carubv10001099m.g Capsella rubella Carubv10001099m.g I 0.000
Carubv10013771m.g Capsella rubella Carubv10013771m.g I 0.000
Carubv10023556m.g Capsella rubella Carubv10023556m.g I 0.000
cassava19475.valid.m1 Manihot esculenta cassava19475.valid.m1 I 0.000
chr1.LjT01D01.90.nd Lotus japonicus chr1.LjT01D01.90.nd I 0.000
Cla006713 Citrullus lanatus Cla006713 I 0.000
Cucsa.136780 Cucumis sativus Cucsa.136780 I 0.000
DREB2A Arabidopsis thaliana AT5G05410 D 0.000
DREB2A Arabidopsis lyrata fgenesh2_kg.6__469__AT5G05410.1 I 0.000
DREB2B Arabidopsis thaliana AT3G11020 I 0.000
DREB2B Arabidopsis lyrata fgenesh2_kg.3__1148__AT3G11020.1 I 0.000
evm.TU.supercontig_19.121 Carica papaya evm.TU.supercontig_19.121 I 0.000
GLYMA07G19221 Glycine max GLYMA07G19221 I 0.000
GLYMA18G43750 Glycine max GLYMA18G43750 I 0.000
GSMUA_Achr9G04630_001 Musa acuminata GSMUA_Achr9G04630_001 I 0.000
GSMUA_AchrUn_randomG14580_001 Musa acuminata GSMUA_AchrUn_randomG14580_001 I 0.000
gw1.120.55.1 Physcomitrella patens gw1.120.55.1 I 0.000
MTR_5g083340 Medicago truncatula MTR_5g083340 I 0.000
MTR_7g070220 Medicago truncatula MTR_7g070220 I 0.000
PDK_20s1493381g003 Phoenix dactylifera PDK_20s1493381g003 I 0.000
PGSC0003DMG401023951 Solanum tuberosum PGSC0003DMG401023951 I 0.000
PK07402.1 Cannabis sativa PK07402.1 D 0.000
POPTR_0010s19100 Populus trichocarpa POPTR_0010s19100 I 0.000
SapurV1A.1286s0030 Salix purpurea SapurV1A.1286s0030 I 0.000
SapurV1A.2268s0010 Salix purpurea SapurV1A.2268s0010 I 0.000
Solyc06g050520.1 Solanum lycopersicum Solyc06g050520.1 I 0.000
Thhalv10021161m.g Eutrema salsugineum Thhalv10021161m.g I 0.000
VIT_13s0067g01960 Vitis vinifera VIT_13s0067g01960 I 0.000