zbtb18.L (Xenopus laevis)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00096 (zf-C2H2) IPR007087 XB-GENE-1003548 T145337_2.00 Misc (2018-Jan-19)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
ZBTB18
M02916_2.00 		Homo sapiens
VMACATCTGGAWN
NWTCCAGATGTKB		 SELEX
Jolma et al.(2013)
ZNF238_1 		0.827 1.000
ZBTB18
M02917_2.00 		Homo sapiens
NMACATCTGGMHN
NDKCCAGATGTKN		 SELEX
Jolma et al.(2013)
ZNF238_2 		0.827 1.000
ZBTB18
M04585_2.00 		Homo sapiens
NMACATCTGGMHN
NDKCCAGATGTKN		 SELEX
Yin et al.(2017)
ZBTB18_eDBD_HT-SELEX 		0.827 1.000
ZBTB18
M08350_2.00 		Homo sapiens
MRCAKCTGG
CCAGMTGYK		 ChIP-seq
Schmitges et al.(2016)
Q99592_2-4.RCADE 		0.827 1.000
ZBTB18
M08257_2.00 		Homo sapiens
NMGCAGCTGCKB
VMGCAGCTGCKN		 ChIP-seq
Najafabadi et al.(2015b)
ZNF238 		0.827 1.000
ZBTB18
M08928_2.00 		Homo sapiens
VMRCAKCTGGV
BCCAGMTGYKB		 Misc
Kulakovskiy et al.(2013)
ZBT18_HUMAN.H11MO.0.C 		0.827 1.000
ZBTB18
M10282_2.00 		Homo sapiens
NNMACATCTGGM
KCCAGATGTKNN		 Transfac
Matys et al.(2006)
V$RP58_01 		0.827 1.000
ZBTB18
M10283_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$RP58_Q3 		0.827 1.000
ZBTB18
M04586_2.00 		Homo sapiens
NMACATCTGBHNN
NNDVCAGATGTKN		 SELEX
Yin et al.(2017)
ZBTB18_eDBD_Methyl-HT-SELEX 		0.827 1.000
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
AAH48019 C2H2 ZF 379 401
AAH48019 C2H2 ZF 420 441
AAH48019 C2H2 ZF 447 469
AAH48019 C2H2 ZF 475 498

Links

Other C2H2 ZF family TFs
Other Xenopus laevis TFs

72 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
30147.m014401 Ricinus communis 30147.m014401 I 0.000
AMTR_s00016p00083040 Amborella trichopoda AMTR_s00016p00083040 I 0.000
Aquca_043_00044 Aquilegia coerulea Aquca_043_00044 I 0.000
Bo2g161690 Brassica oleracea Bo2g161690 I 0.000
Bo3g109270 Brassica oleracea Bo3g109270 I 0.000
Bostr.26833s0050 Boechera stricta Bostr.26833s0050 I 0.000
Bra019619 Brassica rapa Bra019619 I 0.000
Bra029305 Brassica rapa Bra029305 I 0.000
BRADI5G20340 Brachypodium distachyon BRADI5G20340 I 0.000
Cagra.4553s0022 Capsella grandiflora Cagra.4553s0022 I 0.000
cassava19992.m1 Manihot esculenta cassava19992.m1 I 0.000
cassava40548.m1 Manihot esculenta cassava40548.m1 I 0.000
Ca_01386 Cicer arietinum Ca_01386 I 0.000
chr1.CM0094.750.nd Lotus japonicus chr1.CM0094.750.nd I 0.000
Ciclev10033942m.g Citrus clementina Ciclev10033942m.g I 0.000
Cla019619 Citrullus lanatus Cla019619 I 0.000
Cucsa.156880 Cucumis sativus Cucsa.156880 I 0.000
estExt_fgenesh1_pg.C_740147 Physcomitrella patens estExt_fgenesh1_pg.C_740147 I 0.000
Eucgr.K02192 Eucalyptus grandis Eucgr.K02192 I 0.000
evm.TU.supercontig_13.181 Carica papaya evm.TU.supercontig_13.181 I 0.000
FL Oryza sativa OS04G0598300 I 0.000
FL Populus trichocarpa POPTR_0015s11820 I 0.000
gene30683-v1.0-hybrid Fragaria vesca gene30683-v1.0-hybrid I 0.000
gene30747-v1.0-hybrid Fragaria vesca gene30747-v1.0-hybrid I 0.000
gene30750-v1.0-hybrid Fragaria vesca gene30750-v1.0-hybrid I 0.000
gene33406-v1.0-hybrid Fragaria vesca gene33406-v1.0-hybrid I 0.000
GLYMA04G37900 Glycine max GLYMA04G37900 I 0.000
GLYMA06G17170 Glycine max GLYMA06G17170 I 0.000
Gorai.001G053900 Gossypium raimondii Gorai.001G053900 I 0.000
GRMZM2G098813 Zea mays GRMZM2G098813 I 0.000
GRMZM2G180190 Zea mays GRMZM2G180190 I 0.000
GSMUA_Achr6G16390_001 Musa acuminata GSMUA_Achr6G16390_001 I 0.000
LFY Arabidopsis thaliana AT5G61850 D 0.000
LFY Arabidopsis lyrata Al_scaffold_0008_2690 I 0.000
LFY Vitis vinifera VIT_17s0000g00150 I 0.000
LPERR04G19570 Leersia perrieri LPERR04G19570 I 0.000
Lus10016732.g Linum usitatissimum Lus10016732.g I 0.000
Lus10022427.g Linum usitatissimum Lus10022427.g I 0.000
mgf013601m Mimulus guttatus mgf013601m I 0.000
mgf020579m Mimulus guttatus mgf020579m I 0.000
MLOC_14305 Hordeum vulgare MLOC_14305 I 0.000
MTR_3g098560 Medicago truncatula MTR_3g098560 I 0.000
OB04G30790 Oryza brachyantha OB04G30790 I 0.000
OBART04G23870 Oryza barthii OBART04G23870 I 0.000
OGLUM04G23830 Oryza glumaepatula OGLUM04G23830 I 0.000
OLONG_021167 Oryza longistaminata OLONG_021167 I 0.000
OMERI04G19760 Oryza meridionalis OMERI04G19760 I 0.000
ONIVA04G23030 Oryza nivara ONIVA04G23030 I 0.000
OPUNC04G21410 Oryza punctata OPUNC04G21410 I 0.000
orange1.1g044766m.g Citrus sinensis orange1.1g044766m.g I 0.000
ORGLA04G0204600 Oryza glaberrima ORGLA04G0204600 I 0.000
ORUFI04G25610 Oryza rufipogon ORUFI04G25610 I 0.000
OSL Oryza indica BGIOSGA014428 I 0.000
Pavir.Ga00621 Panicum virgatum Pavir.Ga00621 I 0.000
Pavir.Gb00795 Panicum virgatum Pavir.Gb00795 I 0.000
Pm024610 Prunus mume Pm024610 I 0.000
PRUPE_ppa006372mg Prunus persica PRUPE_ppa006372mg I 0.000
SapurV1A.2394s0010 Salix purpurea SapurV1A.2394s0010 I 0.000
Sb06g027340 Sorghum bicolor Sb06g027340 I 0.000
SELMODRAFT_85923 Selaginella moellendorffii SELMODRAFT_85923 I 0.000
Si011756m.g Setaria italica Si011756m.g I 0.000
Solyc03g118160.1 Solanum lycopersicum Solyc03g118160.1 I 0.000
TCM_014768 Theobroma cacao TCM_014768 I 0.000
Thhalv10005606m.g Eutrema salsugineum Thhalv10005606m.g I 0.000
Traes_2AL_83D0D0C3F Triticum aestivum Traes_2AL_83D0D0C3F I 0.000
Traes_2BL_8DEC0EFBF Triticum aestivum Traes_2BL_8DEC0EFBF I 0.000