L898_g8627 (Steinernema monticolum)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00096 (zf-C2H2) IPR007087 L898_g8627 T154828_2.00 WormBase:ParaSite (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
erm
M03686_2.00 		Drosophila melanogaster
TGATTGCTCWTTT
AAAWGAGCAATCA		 SELEX
Nitta et al.(2015)
CG31670_1 		0.769 0.848
erm
M06128_2.00 		Drosophila melanogaster
KWTGYKCWTTT
AAAWGMRCAWM		 B1H
Zhu et al.(2011)
CG31670_SANGER_5_FBgn0031375 		0.769 0.848
erm
M06129_2.00 		Drosophila melanogaster
BBRTTGCTCWTTTBN
NVAAAWGAGCAAYVV		 B1H
Zhu et al.(2011)
CG31670_SOLEXA_5_FBgn0031375 		0.769 0.848
FEZF1
M08307_2.00 		Homo sapiens
NNBTGYYYTTTTNNN
NNNAAAARRRCAVNN		 ChIP-seq
Schmitges et al.(2016)
A0PJY2_1-5.RCADE 		0.768 0.848
FEZF1
M08889_2.00 		Homo sapiens
DYTGYYCWTTTN
NAAAWGRRCARH		 Misc
Kulakovskiy et al.(2013)
FEZF1_HUMAN.H11MO.0.C 		0.768 0.848
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
L898_g8627.t1 C2H2 ZF 83 105
L898_g8627.t1 C2H2 ZF 111 133
L898_g8627.t1 C2H2 ZF 139 161
L898_g8627.t1 C2H2 ZF 167 189
L898_g8627.t1 C2H2 ZF 195 217
L898_g8627.t1 C2H2 ZF 223 246

Links

Other C2H2 ZF family TFs
Other Steinernema monticolum TFs

155 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
30024.m001687 Ricinus communis 30024.m001687 N 0.000
AMTR_s00057p00091350 Amborella trichopoda AMTR_s00057p00091350 I 0.000
Aquca_015_00350 Aquilegia coerulea Aquca_015_00350 N 0.000
Bo2g046220 Brassica oleracea Bo2g046220 N 0.000
Bo9g108730 Brassica oleracea Bo9g108730 N 0.000
Bostr.26833s0978 Boechera stricta Bostr.26833s0978 N 0.000
Bra003088 Brassica rapa Bra003088 N 0.000
Bra022622 Brassica rapa Bra022622 N 0.000
Cagra.0084s0050 Capsella grandiflora Cagra.0084s0050 N 0.000
Carubv10028317m.g Capsella rubella Carubv10028317m.g N 0.000
cassava34339.m1 Manihot esculenta cassava34339.m1 N 0.000
cassava39076.m1 Manihot esculenta cassava39076.m1 N 0.000
Ca_03992 Cicer arietinum Ca_03992 N 0.000
chr1.CM0033.390.nc Lotus japonicus chr1.CM0033.390.nc N 0.000
Cla004331 Citrullus lanatus Cla004331 N 0.000
evm.TU.supercontig_3.98 Carica papaya evm.TU.supercontig_3.98 N 0.000
fgenesh1_pm.C_scaffold_8001005 Arabidopsis lyrata fgenesh1_pm.C_scaffold_8001005 N 0.000
gene12898-v1.0-hybrid Fragaria vesca gene12898-v1.0-hybrid N 0.000
GLYMA04G41320 Glycine max GLYMA04G41320 N 0.000
GLYMA06G13530 Glycine max GLYMA06G13530 N 0.000
GLYMA06G13540 Glycine max GLYMA06G13540 N 0.000
Gorai.003G121600 Gossypium raimondii Gorai.003G121600 N 0.000
GSMUA_AchrUn_randomG11290_001 Musa acuminata GSMUA_AchrUn_randomG11290_001 N 0.000
LjSGA_030914.1 Lotus japonicus LjSGA_030914.1 N 0.000
Lus10005921.g Linum usitatissimum Lus10005921.g N 0.000
MDP0000141137 Malus domestica MDP0000141137 N 0.000
MDP0000819497 Malus domestica MDP0000819497 N 0.000
mgf025545m Mimulus guttatus mgf025545m N 0.000
MLOC_12609 Hordeum vulgare MLOC_12609 I 0.000
PGSC0003DMG400018531 Solanum tuberosum PGSC0003DMG400018531 N 0.000
POPTR_0012s02390 Populus trichocarpa POPTR_0012s02390 N 0.000
POPTR_0015s01410 Populus trichocarpa POPTR_0015s01410 N 0.000
PRUPE_ppa015130mg Prunus persica PRUPE_ppa015130mg N 0.000
RKD4 Arabidopsis thaliana AT5G53040 N 0.000
SapurV1A.0250s0360 Salix purpurea SapurV1A.0250s0360 N 0.000
SapurV1A.0498s0250 Salix purpurea SapurV1A.0498s0250 N 0.000
Solyc03g083040.1 Solanum lycopersicum Solyc03g083040.1 N 0.000
TCM_015430 Theobroma cacao TCM_015430 N 0.000
Thhalv10015321m.g Eutrema salsugineum Thhalv10015321m.g N 0.000
VIT_16s0098g01730 Vitis vinifera VIT_16s0098g01730 N 0.000