Pm014858 (Prunus mume)
FAR1

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF03101 (FAR1) IPR004330 Pm014858 T180990_2.00 GigaDB (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
FAR1
M06880_2.00 		Arabidopsis thaliana
NNYHCACGCGCYDNH
DNHRGCGCGTGDRNN		 Dap-seq
OMalley et al.(2016)
FAR1_col_a 		0.886 0.886
FAR1
M06881_2.00 		Arabidopsis thaliana
NNNNBDNDNNYHCACGCGCYD
HRGCGCGTGDRNNHNHVNNNN		 Dap-seq
OMalley et al.(2016)
FAR1_colamp_a 		0.886 0.886
FHY3
M08114_2.00 		Arabidopsis thaliana
NHCACGCGCTNN
NNAGCGCGTGDN		 ChIP-seq
Mathelier et al.(2014)
MA0557.1 		0.705 0.705
FHY3
M09540_2.00 		Arabidopsis thaliana
NHSACGCGCBNN
NNVGCGCGTSDN		 Misc
Heinz et al.(2010)
Arabidopsis-FHY3_GSE30711 		0.705 0.705
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Pm014858 FAR1 76 163

Links

Other FAR1 family TFs
Other Prunus mume TFs

49 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
A_02598 Schistosoma haematobium A_02598 N
EmuJ_000419500 Echinococcus multilocularis EmuJ_000419500 N
HDID_0000507901 Hymenolepis diminuta HDID_0000507901 N
MCOS_0000070201 Mesocestoides corti MCOS_0000070201 N
PXEA_0002198701 Protopolystoma xenopodis PXEA_0002198701 N
SCUD_0000710001 Schistosoma curassoni SCUD_0000710001 N
Sjc_0040590 Schistosoma japonicum Sjc_0040590 N
Smp_073680 Schistosoma mansoni Smp_073680 N
SMRZ_0000513201 Schistosoma margrebowiei SMRZ_0000513201 N
SMTD_0001467001 Schistosoma mattheei SMTD_0001467001 N
SROB_0001853501 Schistosoma rodhaini SROB_0001853501 N
SSLN_0000810201 Schistocephalus solidus SSLN_0000810201 N
T265_05686 Opisthorchis viverrini T265_05686 N
TsM_000321300 Taenia solium TsM_000321300 N