CIS-BP Database: Catalog of Inferred Sequence Binding Preferences

TF Information

BGIBMGA005101 *(Bombyx mori)* Forkhead
Pfam ID	Interpro ID	Gene ID	CIS-BP ID	Sequence source	Animal TF db
PF00250 (Forkhead)	IPR001766	BGIBMGA005101	T184628_2.00	Ensembl (2018-Dec-8)	Link out
Directly determined binding motifs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
No direct experiments
Motifs from related TFs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
fkh M03734_2.00	Drosophila melanogaster	WRWGYMAATATTKRCWYW	WRWGYMAATATTKRCWYW	SELEX Nitta et al.(2015) fkh_1	0.855	0.977
fkh M03735_2.00	Drosophila melanogaster	HWASAATAAYAWT	AATRTTATTSTWD	SELEX Nitta et al.(2015) fkh_2	0.855	0.977
fkh M06473_2.00	Drosophila melanogaster	NTRDDYAAACA	TGTTTRHHYAN	B1H Mathelier et al.(2014) MA0446.1	0.855	0.977
fkh M06194_2.00	Drosophila melanogaster	NTRDDYAAACA	TGTTTRHHYAN	B1H Zhu et al.(2011) fkh_NAR_FBgn0000659	0.855	0.977
fkh M08200_2.00	Drosophila melanogaster	NTRDDYAAACA	TGTTTRHHYAN	ChIP-seq Contrino et al.(2012) Mf15	0.855	0.977
fkh M09668_2.00	Drosophila melanogaster	TRTTTRCAHAAG	CTTDTGYAAAYA	Misc Kulakovskiy et al.(2009) fkh	0.855	0.977
FOXA1 M04817_2.00	Homo sapiens	NTRTKTACMYWN	NWRKGTAMAYAN	SELEX Yin et al.(2017) FOXA1_eDBD_HT-SELEX	0.850	0.907
FOXA1 M04819_2.00	Homo sapiens	BVYTAWGTAAACAAWN	NWTTGTTTACWTARBV	SELEX Yin et al.(2017) FOXA1_FL_HT-SELEX_1	0.850	0.907
FOXA1 M04820_2.00	Homo sapiens	HWRWRYAAATATTKACWYWR	YWRWGTMAATATTTRYWYWD	SELEX Yin et al.(2017) FOXA1_FL_HT-SELEX_2	0.850	0.907
FOXA1 M08117_2.00	Homo sapiens	NNNNTRTTTACWYWD	HWRWGTAAAYANNNN	ChIP-seq Mathelier et al.(2014) MA0148.3	0.850	0.907
FOXA1 M07960_2.00	Homo sapiens	NNYWRWGYAAACANN	NNTGTTTRCWYWRNN	ChIP-seq Gerstein et al.(2012) ECC-1_FOXA1_HudsonAlpha	0.850	0.907
FOXA1 M07961_2.00	Homo sapiens	HWRWGTAAAYA	TRTTTACWYWD	ChIP-seq Gerstein et al.(2012) HepG2_FOXA1_HudsonAlpha	0.850	0.907
FOXA1 M07962_2.00	Homo sapiens	NWVWGTAAACA	TGTTTACWBWN	ChIP-seq Gerstein et al.(2012) T-47D_FOXA1_HudsonAlpha	0.850	0.907
FOXA1 M08199_2.00	Homo sapiens	BWRDGTAAACANN	NNTGTTTACHYWV	ChIP-seq Contrino et al.(2012) Mv69	0.850	0.907
FOXA1 M08028_2.00	Homo sapiens	WRWRYAAAYA	TRTTTRYWYW	ChIP-seq Chen et al.(2011) GSE15244_FoxA1	0.850	0.907
FOXA1 M09090_2.00	Homo sapiens	VHWRWGTAAACA	TGTTTACWYWDB	Misc Kulakovskiy et al.(2013) FOXA1_HUMAN.H11MO.0.A	0.850	0.907
Foxa1 M09103_2.00	Mus musculus	TRTTKACWYW	WRWGTMAAYA	Misc Kulakovskiy et al.(2013) FOXA1_MOUSE.H11MO.0.A	0.850	0.907
FOXA1 M09544_2.00	Homo sapiens	WGCCAARRYAAAYANN	NNTRTTTRYYTTGGCW	Misc Heinz et al.(2010) LNCAP-FOXA1_GSE27824_2	0.850	0.907
FOXA1 M09543_2.00	Homo sapiens	WRWGTAAACA	TGTTTACWYW	Misc Heinz et al.(2010) LNCAP-FOXA1_GSE27824_1	0.850	0.907
FOXA1 M09545_2.00	Homo sapiens	WRWGTAAAYA	TRTTTACWYW	Misc Heinz et al.(2010) MCF7-FOXA1_GSE26831	0.850	0.907
FOXA1 M10542_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$FOXA1_02	0.850	0.907
FOXA1 M10543_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$FOXA1_03	0.850	0.907
FOXA1 M10544_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$HNF3A_01	0.850	0.907
FOXA1 M10545_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$HNF3ALPHA_Q6	0.850	0.907
FOXA1 M10546_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$HNF3A_Q6	0.850	0.907
FOXA1 M04818_2.00	Homo sapiens	NWRDGYMAAYAW	WTRTTKRCHYWN	SELEX Yin et al.(2017) FOXA1_eDBD_Methyl-HT-SELEX	0.850	0.907
FOXA1 M04821_2.00	Homo sapiens	BVYTAWGTAAACAAWV	BWTTGTTTACWTARBV	SELEX Yin et al.(2017) FOXA1_FL_Methyl-HT-SELEX_1	0.850	0.907
FOXA1 M04822_2.00	Homo sapiens	YTRWRYAAATATTTACWYAR	YTRWGTAAATATTTRYWYAR	SELEX Yin et al.(2017) FOXA1_FL_Methyl-HT-SELEX_2	0.850	0.907
Foxa2 M00162_2.00	Mus musculus	GTAAAYAW	WTRTTTAC	PBM Badis et al.(2009) Foxa2_2830	0.849	0.919
FOXA2 M04815_2.00	Homo sapiens	NHVNRYMAATATTKACNNDN	NHNNGTMAATATTKRYNBDN	SELEX Yin et al.(2017) FOXA2_eDBD_HT-SELEX	0.849	0.919
Foxa2 M08121_2.00	Mus musculus	TRTTTACWYWDN	NHWRWGTAAAYA	ChIP-seq Mathelier et al.(2014) MA0047.2	0.849	0.919
FOXA2 M07959_2.00	Homo sapiens	NNWRWGYAAAYANNN	NNNTRTTTRCWYWNN	ChIP-seq Gerstein et al.(2012) HepG2_FOXA2_HudsonAlpha	0.849	0.919
FOXA2 M09088_2.00	Homo sapiens	NHWRWGTAAACA	TGTTTACWYWDN	Misc Kulakovskiy et al.(2013) FOXA2_HUMAN.H11MO.0.A	0.849	0.919
Foxa2 M09104_2.00	Mus musculus	BNHTRTTKACWYW	WRWGTMAAYADNV	Misc Kulakovskiy et al.(2013) FOXA2_MOUSE.H11MO.0.A	0.849	0.919
FOXA2 M09542_2.00	Homo sapiens	WVWGTMAACANV	BNTGTTKACWBW	Misc Heinz et al.(2010) Liver-Foxa2_GSE25694	0.849	0.919
FOXA2 M10540_2.00	Homo sapiens	WAARYAAAYADKNMV	BKNMHTRTTTRYTTW	Transfac Matys et al.(2006) V$HNF3B_01	0.849	0.919
FOXA2 M10541_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$HNF3B_Q6	0.849	0.919
AAA20679 M10575_2.00	Xenopus laevis	WNWGTMAACAWWMW	WKWWTGTTKACWNW	Transfac Matys et al.(2006) V$XFD3_01	0.849	0.919
FOXA2 M04816_2.00	Homo sapiens	NWRNRYMAATATTKACWNWN	NWNWGTMAATATTKRYNYWN	SELEX Yin et al.(2017) FOXA2_eDBD_Methyl-HT-SELEX	0.849	0.919
Q2L6N7_PELSI M01990_2.00	Trionyx sinensis	KTRTTTACA	TGTAAAYAM	PBM Weirauch et al.(2014) pTH5334	0.837	0.849
FOXA3 M04831_2.00	Homo sapiens	BVYTAWGTAAACAAAN	NTTTGTTTACWTARBV	SELEX Yin et al.(2017) FOXA3_FL_HT-SELEX_1	0.817	0.860
FOXA3 M04832_2.00	Homo sapiens	HWRWGYAAATATTKACWYWD	HWRWGTMAATATTTRCWYWD	SELEX Yin et al.(2017) FOXA3_FL_HT-SELEX_2	0.817	0.860
FOXA3 M09096_2.00	Homo sapiens	HWRWGTMAAYADN	NHTRTTKACWYWD	Misc Kulakovskiy et al.(2013) FOXA3_HUMAN.H11MO.0.B	0.817	0.860
Foxa3 M09106_2.00	Mus musculus	HWRWGTMAAYADN	NHTRTTKACWYWD	Misc Kulakovskiy et al.(2013) FOXA3_MOUSE.H11MO.0.A	0.817	0.860
FOXA3 M10557_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$HNF3G_Q4	0.817	0.860
FOXA3 M04833_2.00	Homo sapiens	CVYTAWGTAAACAAWB	VWTTGTTTACWTARBG	SELEX Yin et al.(2017) FOXA3_FL_Methyl-HT-SELEX_1	0.817	0.860
FOXA3 M04834_2.00	Homo sapiens	HWRWGYAAATATTKACWYWD	HWRWGTMAATATTTRCWYWD	SELEX Yin et al.(2017) FOXA3_FL_Methyl-HT-SELEX_2	0.817	0.860
pha-4 M08123_2.00	Caenorhabditis elegans	WRWGYAAAYA	TRTTTRCWYW	ChIP-seq Mathelier et al.(2014) MA0546.1	0.780	0.837
pha-4 M08201_2.00	Caenorhabditis elegans	GTAAACAR	YTGTTTAC	ChIP-seq Contrino et al.(2012) Mw164	0.780	0.837
pha-4 M09548_2.00	Caenorhabditis elegans	RYAMAYAN	NTRTKTRY	Misc Heinz et al.(2010) cElegans-Embryos-PHA4_modEncode	0.780	0.837
Foxb1 M01983_2.00	Mus musculus	TRTTKAYWYW	WRWRTMAAYA	PBM Weirauch et al.(2014) pTH2808	0.723	0.744
FOXB1 M03028_2.00	Homo sapiens	GAATGACACRGCKV	BMGCYGTGTCATTC	SELEX Jolma et al.(2013) FOXB1_1	0.723	0.744
FOXB1 M03029_2.00	Homo sapiens	WRWGTMAATATTKACWYW	WRWGTMAATATTKACWYW	SELEX Jolma et al.(2013) FOXB1_2	0.723	0.744
FOXB1 M03030_2.00	Homo sapiens	WTRTTKACWTW	WAWGTMAAYAW	SELEX Jolma et al.(2013) FOXB1_3	0.723	0.744
FOXB1 M03031_2.00	Homo sapiens	NTRTTTACW	WGTAAAYAN	SELEX Jolma et al.(2013) FOXB1_4	0.723	0.744
FOXB1 M04837_2.00	Homo sapiens	NWRDGYMAATATTKRCWYWD	HWRWGYMAATATTKRCHYWN	SELEX Yin et al.(2017) FOXB1_eDBD_HT-SELEX	0.723	0.744
FOXB1 M04838_2.00	Homo sapiens	NWRNGYMAATATTKRCDYWD	HWRHGYMAATATTKRCNYWN	SELEX Yin et al.(2017) FOXB1_eDBD_Methyl-HT-SELEX	0.723	0.744
fd96Ca M03743_2.00	Drosophila melanogaster	WRWGYMAATATTKRCWYW	WRWGYMAATATTKRCWYW	SELEX Nitta et al.(2015) fd96Ca_1	0.715	0.686
fd64A M06197_2.00	Drosophila melanogaster	KVWAAACA	TGTTTWBM	B1H Zhu et al.(2011) fd64A_SANGER_5_FBgn0004895	0.674	0.628
FOXC1 M00257_2.00	Homo sapiens	NNNVHHAAYA	TRTTDDBNNN	PBM Barrera et al.(2016) FOXC1_REF	0.665	0.756
Foxc2 M00796_2.00	Mus musculus	HNNRHMAAYA	TRTTKDYNND	PBM Weirauch et al.(2013) pTH3796	0.665	0.756
Foxc1 M01982_2.00	Mus musculus	HNNRHMAAYA	TRTTKDYNND	PBM Weirauch et al.(2014) pTH2673	0.665	0.756
FOXC1 M03013_2.00	Homo sapiens	AWRTAAAYAAAYA	TRTTTRTTTAYWT	SELEX Jolma et al.(2013) FOXC1_1	0.665	0.756
FOXC1 M03014_2.00	Homo sapiens	NRWMAATATTKWYN	NRWMAATATTKWYN	SELEX Jolma et al.(2013) FOXC1_2	0.665	0.756
FOXC1 M03015_2.00	Homo sapiens	WRWRTMAAYAW	WTRTTKAYWYW	SELEX Jolma et al.(2013) FOXC1_3	0.665	0.756
FOXC2 M03036_2.00	Homo sapiens	NRTMAATATTDWYN	NRWHAATATTKAYN	SELEX Jolma et al.(2013) FOXC2_1	0.665	0.756
FOXC2 M03037_2.00	Homo sapiens	RTAAAYAAACA	TGTTTRTTTAY	SELEX Jolma et al.(2013) FOXC2_2	0.665	0.756
FOXC2 M03038_2.00	Homo sapiens	WAHRTMAAYAWW	WWTRTTKAYDTW	SELEX Jolma et al.(2013) FOXC2_3	0.665	0.756
Foxc1 M03059_2.00	Mus musculus	RTAAAYAAACA	TGTTTRTTTAY	SELEX Jolma et al.(2013) Foxc1_1	0.665	0.756
Foxc1 M03060_2.00	Mus musculus	RTAAACA	TGTTTAY	SELEX Jolma et al.(2013) Foxc1_2	0.665	0.756
FOXC2 M04841_2.00	Homo sapiens	NHVNRYMAACAH	DTGTTKRYNBDN	SELEX Yin et al.(2017) FOXC2_eDBD_HT-SELEX_1	0.665	0.756
FOXC2 M04842_2.00	Homo sapiens	RHAMAYAAACAH	DTGTTTRTKTDY	SELEX Yin et al.(2017) FOXC2_eDBD_HT-SELEX_2	0.665	0.756
FOXC1 M09083_2.00	Homo sapiens	SBWAWRTAAACADHN	NDHTGTTTAYWTWVS	Misc Kulakovskiy et al.(2013) FOXC1_HUMAN.H11MO.0.C	0.665	0.756
Foxc1 M09111_2.00	Mus musculus	SBWAWRTAAACADHN	NDHTGTTTAYWTWVS	Misc Kulakovskiy et al.(2013) FOXC1_MOUSE.H11MO.0.C	0.665	0.756
FOXC2 M10559_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$FKHL14_Q2	0.665	0.756
FOXC1 M10525_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$FOXC1_Q4	0.665	0.756
FOXC1 M10526_2.00	Homo sapiens	TSTTTATTTACDBNVN	NBNVHGTAAATAAASA	Transfac Matys et al.(2006) V$FREAC3_01	0.665	0.756
FOXC2 M04843_2.00	Homo sapiens	NHNNRYMAACAN	NTGTTKRYNNDN	SELEX Yin et al.(2017) FOXC2_eDBD_Methyl-HT-SELEX_1	0.665	0.756
FOXC2 M04844_2.00	Homo sapiens	VHMMAYAAACAN	NTGTTTRTKKDB	SELEX Yin et al.(2017) FOXC2_eDBD_Methyl-HT-SELEX_2	0.665	0.756
FOXC1 M00253_2.00	Homo sapiens	NNHATAAWHAN	NTDWTTATDNN	PBM Barrera et al.(2016) FOXC1_F112S	0.665	0.744
FOXC1 M00255_2.00	Homo sapiens	NRTATATWHNNN	NNNDWATATAYN	PBM Barrera et al.(2016) FOXC1_L130F	0.665	0.744
FOXC1 M00256_2.00	Homo sapiens	NNNNWWTYAMAWN	NWTKTRAWWNNNN	PBM Barrera et al.(2016) FOXC1_P79L	0.665	0.744
FOXC1 M00258_2.00	Homo sapiens	NNNAMAAYANN	NNTRTTKTNNN	PBM Barrera et al.(2016) FOXC1_S131L	0.665	0.744
FOXC1 M00259_2.00	Homo sapiens	RTAAACAW	WTGTTTAY	PBM Barrera et al.(2016) FOXC1_S82T	0.665	0.744
For this family, TFs with SR scores > 0.664* will likely have a similar motif*

DNA Binding Domains

Protein ID	Domain	From	To	Sequence
BGIBMGA005101-TA	Forkhead	113	202	KPPYSYISLITMAIQNNPSRMLTLSEIYQFIMDLFPFYRQNQQRWQNSIRHSLSFNDCFVKVPRTPDKPGKGSFWTLHPDSGNMFENGCF

Links
Other Forkhead family TFs
Other *Bombyx mori* TFs

686 Related TFs

Name	Species	Gene ID	Motif Evidence	SR Score	Action
29726.m003959	Ricinus communis	29726.m003959	I
AMTR_s00197p00030350	Amborella trichopoda	AMTR_s00197p00030350	I
Aquca_026_00098	Aquilegia coerulea	Aquca_026_00098	I
Bo9g154530	Brassica oleracea	Bo9g154530	I
Bostr.26527s0326	Boechera stricta	Bostr.26527s0326	I
Bra002188	Brassica rapa	Bra002188	I
Bra023695	Brassica rapa	Bra023695	I
BRADI2G25580	Brachypodium distachyon	BRADI2G25580	I
Cagra.0263s0012	Capsella grandiflora	Cagra.0263s0012	I
Carubv10002913m.g	Capsella rubella	Carubv10002913m.g	I
cassava1985.valid.m1	Manihot esculenta	cassava1985.valid.m1	I
cassava7955.valid.m1	Manihot esculenta	cassava7955.valid.m1	I
cassava7956.valid.m1	Manihot esculenta	cassava7956.valid.m1	I
Ca_00550	Cicer arietinum	Ca_00550	I
Ciclev10004348m.g	Citrus clementina	Ciclev10004348m.g	I
Cla022022	Citrullus lanatus	Cla022022	I
Cucsa.253690	Cucumis sativus	Cucsa.253690	I
Eucgr.B01228	Eucalyptus grandis	Eucgr.B01228	I
F775_04392	Aegilops tauschii	F775_04392	I
gene06692-v1.0-hybrid	Fragaria vesca	gene06692-v1.0-hybrid	I
GLYMA13G28460	Glycine max	GLYMA13G28460	I
Gorai.005G056500	Gossypium raimondii	Gorai.005G056500	I
Gorai.011G183800	Gossypium raimondii	Gorai.011G183800	I
GRMZM2G109354	Zea mays	GRMZM2G109354	I
GSMUA_Achr3G09190_001	Musa acuminata	GSMUA_Achr3G09190_001	I
GSMUA_Achr3G23780_001	Musa acuminata	GSMUA_Achr3G23780_001	I
GSMUA_Achr5G26880_001	Musa acuminata	GSMUA_Achr5G26880_001	I
GSMUA_Achr9G17440_001	Musa acuminata	GSMUA_Achr9G17440_001	I
LPERR05G12780	Leersia perrieri	LPERR05G12780	I
Lus10012782.g	Linum usitatissimum	Lus10012782.g	I
Lus10033993.g	Linum usitatissimum	Lus10033993.g	I
MDP0000195461	Malus domestica	MDP0000195461	I
MDP0000271587	Malus domestica	MDP0000271587	I
mgf004695m	Mimulus guttatus	mgf004695m	I
MTR_2g020620	Medicago truncatula	MTR_2g020620	I
OB05G24080	Oryza brachyantha	OB05G24080	I
OBART05G16150	Oryza barthii	OBART05G16150	I
OGLUM05G17090	Oryza glumaepatula	OGLUM05G17090	I
OLONG_015968	Oryza longistaminata	OLONG_015968	I
ONIVA05G16770	Oryza nivara	ONIVA05G16770	I
OPUNC05G14270	Oryza punctata	OPUNC05G14270	I
orange1.1g003787m.g	Citrus sinensis	orange1.1g003787m.g	I
ORUFI05G17320	Oryza rufipogon	ORUFI05G17320	I
Pavir.J00965	Panicum virgatum	Pavir.J00965	I
Pavir.J03653	Panicum virgatum	Pavir.J03653	I
PGSC0003DMG401006284	Solanum tuberosum	PGSC0003DMG401006284	I
PK29723.1	Cannabis sativa	PK29723.1	I
Pm008092	Prunus mume	Pm008092	I
POPTR_0008s20160	Populus trichocarpa	POPTR_0008s20160	I
POPTR_0010s02710	Populus trichocarpa	POPTR_0010s02710	I
PRUPE_ppa001613mg	Prunus persica	PRUPE_ppa001613mg	I
SapurV1A.0152s0370	Salix purpurea	SapurV1A.0152s0370	I
SapurV1A.0407s0040	Salix purpurea	SapurV1A.0407s0040	I
Sb09g020110	Sorghum bicolor	Sb09g020110	I
SELMODRAFT_49859	Selaginella moellendorffii	SELMODRAFT_49859	I
SELMODRAFT_49860	Selaginella moellendorffii	SELMODRAFT_49860	I
Si021754m.g	Setaria italica	Si021754m.g	I
Solyc01g080670.2	Solanum lycopersicum	Solyc01g080670.2	I
SPL7	Vitis vinifera	VIT_05s0020g02160	I
SPL7	Arabidopsis lyrata	scaffold_601959.1	I
SPL7	Arabidopsis thaliana	AT5G18830	D
SPL9	Oryza sativa	OS05G0408200	I
TCM_021101	Theobroma cacao	TCM_021101	I
Thhalv10012721m.g	Eutrema salsugineum	Thhalv10012721m.g	I
Traes_1BL_8709BB152	Triticum aestivum	Traes_1BL_8709BB152	I

BGIBMGA005101 (Bombyx mori) Forkhead

TF Information

Directly determined binding motifs

Motifs from related TFs

DNA Binding Domains

Links

686 Related TFs

BGIBMGA005101 **(Bombyx mori)
Forkhead**