MDP0000195461 (Malus domestica)
SBP

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF03110 (SBP) IPR004333 MDP0000195461 T323571_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
SPL7
M02476_2.00 		Arabidopsis thaliana
DGTACKDNN
NNHMGTACH		 PBM
Weirauch et al.(2014)
pTH7288 		0.931 0.813
SPL7
M00888_2.00 		Arabidopsis thaliana
GGRGDAAAGG
CCTTTHCYCC		 PBM
Franco-Zorrilla et al.(2014)
SPL7 		0.931 0.813
For this family, TFs with SR scores > 0.885 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
MDP0000195461 SBP 142 216

Links

Other SBP family TFs
Other Malus domestica TFs

68 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
gene06692-v1.0-hybrid Fragaria vesca gene06692-v1.0-hybrid I 0.974
MDP0000271587 Malus domestica MDP0000271587 I 0.973
PRUPE_ppa001613mg Prunus persica PRUPE_ppa001613mg I 0.967
Pm008092 Prunus mume Pm008092 I 0.967
Bra023695 Brassica rapa Bra023695 I 0.962
Lus10012782.g Linum usitatissimum Lus10012782.g I 0.955
Lus10033993.g Linum usitatissimum Lus10033993.g I 0.955
POPTR_0010s02710 Populus trichocarpa POPTR_0010s02710 I 0.952
SapurV1A.0152s0370 Salix purpurea SapurV1A.0152s0370 I 0.952
Cla022022 Citrullus lanatus Cla022022 I 0.951
cassava1985.valid.m1 Manihot esculenta cassava1985.valid.m1 I 0.951
Cucsa.253690 Cucumis sativus Cucsa.253690 I 0.951
GLYMA13G28460 Glycine max GLYMA13G28460 I 0.950
PGSC0003DMG401006284 Solanum tuberosum PGSC0003DMG401006284 I 0.948
Solyc01g080670.2 Solanum lycopersicum Solyc01g080670.2 I 0.948
cassava7955.valid.m1 Manihot esculenta cassava7955.valid.m1 I 0.948
cassava7956.valid.m1 Manihot esculenta cassava7956.valid.m1 I 0.948
PK29723.1 Cannabis sativa PK29723.1 I 0.948
SPL7 Vitis vinifera VIT_05s0020g02160 I 0.947
Bo00629s160 Brassica oleracea Bo00629s160 I 0.945
Bo9g154530 Brassica oleracea Bo9g154530 I 0.945
Bra002188 Brassica rapa Bra002188 I 0.945
Bostr.26527s0326 Boechera stricta Bostr.26527s0326 I 0.945
Cagra.0263s0012 Capsella grandiflora Cagra.0263s0012 I 0.945
Carubv10002913m.g Capsella rubella Carubv10002913m.g I 0.945
Ciclev10004348m.g Citrus clementina Ciclev10004348m.g I 0.945
orange1.1g003787m.g Citrus sinensis orange1.1g003787m.g I 0.945
AMTR_s00197p00030350 Amborella trichopoda AMTR_s00197p00030350 I 0.944
Gorai.005G056500 Gossypium raimondii Gorai.005G056500 I 0.944
GSMUA_Achr9G17440_001 Musa acuminata GSMUA_Achr9G17440_001 I 0.943
GSMUA_Achr3G23780_001 Musa acuminata GSMUA_Achr3G23780_001 I 0.942
mgf004695m Mimulus guttatus mgf004695m I 0.942
OPUNC05G14270 Oryza punctata OPUNC05G14270 I 0.941
Eucgr.B01228 Eucalyptus grandis Eucgr.B01228 I 0.941
GRMZM2G109354 Zea mays GRMZM2G109354 I 0.940
LPERR05G12780 Leersia perrieri LPERR05G12780 I 0.940
OB05G24080 Oryza brachyantha OB05G24080 I 0.940
OBART05G16150 Oryza barthii OBART05G16150 I 0.940
OGLUM05G17090 Oryza glumaepatula OGLUM05G17090 I 0.940
OLONG_015968 Oryza longistaminata OLONG_015968 I 0.940
ONIVA05G16770 Oryza nivara ONIVA05G16770 I 0.940
ORUFI05G17320 Oryza rufipogon ORUFI05G17320 I 0.940
SPL9 Oryza sativa OS05G0408200 I 0.940
Sb09g020110 Sorghum bicolor Sb09g020110 I 0.940
Si021754m.g Setaria italica Si021754m.g I 0.940
Pavir.J03653 Panicum virgatum Pavir.J03653 I 0.938
SPL7 Arabidopsis lyrata scaffold_601959.1 I 0.937
Traes_1BL_8709BB152 Triticum aestivum Traes_1BL_8709BB152 I 0.937
Pavir.J00965 Panicum virgatum Pavir.J00965 I 0.937
Thhalv10012721m.g Eutrema salsugineum Thhalv10012721m.g I 0.937
Aquca_026_00098 Aquilegia coerulea Aquca_026_00098 I 0.936
TCM_021101 Theobroma cacao TCM_021101 I 0.935
29726.m003959 Ricinus communis 29726.m003959 I 0.934
SPL7 Arabidopsis thaliana AT5G18830 D 0.931
MTR_2g020620 Medicago truncatula MTR_2g020620 I 0.931
SapurV1A.0407s0040 Salix purpurea SapurV1A.0407s0040 I 0.931
Gorai.011G183800 Gossypium raimondii Gorai.011G183800 I 0.929
GSMUA_Achr3G09190_001 Musa acuminata GSMUA_Achr3G09190_001 I 0.927
F775_04392 Aegilops tauschii F775_04392 I 0.925
POPTR_0008s20160 Populus trichocarpa POPTR_0008s20160 I 0.925
Ca_00550 Cicer arietinum Ca_00550 I 0.913
GSMUA_Achr5G26880_001 Musa acuminata GSMUA_Achr5G26880_001 I 0.909
SELMODRAFT_49859 Selaginella moellendorffii SELMODRAFT_49859 I 0.903
SELMODRAFT_49860 Selaginella moellendorffii SELMODRAFT_49860 I 0.901
MDP0000139739 Malus domestica MDP0000139739 N 0.895
MDP0000154138 Malus domestica MDP0000154138 N 0.895
MDP0000181940 Malus domestica MDP0000181940 N 0.895
BRADI2G25580 Brachypodium distachyon BRADI2G25580 I 0.891