Bo00629s160 (Brassica oleracea)
SBP

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF03110 (SBP) IPR004333 Bo00629s160 T322424_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
SPL7
M02476_2.00 		Arabidopsis thaliana
DGTACKDNN
NNHMGTACH		 PBM
Weirauch et al.(2014)
pTH7288 		0.962 0.880
SPL7
M00888_2.00 		Arabidopsis thaliana
GGRGDAAAGG
CCTTTHCYCC		 PBM
Franco-Zorrilla et al.(2014)
SPL7 		0.962 0.880
For this family, TFs with SR scores > 0.885 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Bo00629s160.1 SBP 120 194

Links

Other SBP family TFs
Other Brassica oleracea TFs

65 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Bra023695 Brassica rapa Bra023695 I 0.975
Bo9g154530 Brassica oleracea Bo9g154530 I 0.969
Bra002188 Brassica rapa Bra002188 I 0.969
SPL7 Arabidopsis lyrata scaffold_601959.1 I 0.965
Bostr.26527s0326 Boechera stricta Bostr.26527s0326 I 0.965
Cagra.0263s0012 Capsella grandiflora Cagra.0263s0012 I 0.965
Carubv10002913m.g Capsella rubella Carubv10002913m.g I 0.965
Thhalv10012721m.g Eutrema salsugineum Thhalv10012721m.g I 0.965
cassava1985.valid.m1 Manihot esculenta cassava1985.valid.m1 I 0.964
SPL7 Arabidopsis thaliana AT5G18830 D 0.962
GSMUA_Achr9G17440_001 Musa acuminata GSMUA_Achr9G17440_001 I 0.962
PGSC0003DMG401006284 Solanum tuberosum PGSC0003DMG401006284 I 0.961
Solyc01g080670.2 Solanum lycopersicum Solyc01g080670.2 I 0.961
cassava7955.valid.m1 Manihot esculenta cassava7955.valid.m1 I 0.961
cassava7956.valid.m1 Manihot esculenta cassava7956.valid.m1 I 0.961
Cla022022 Citrullus lanatus Cla022022 I 0.958
Cucsa.253690 Cucumis sativus Cucsa.253690 I 0.958
SPL7 Vitis vinifera VIT_05s0020g02160 I 0.957
MDP0000271587 Malus domestica MDP0000271587 I 0.957
gene06692-v1.0-hybrid Fragaria vesca gene06692-v1.0-hybrid I 0.956
Aquca_026_00098 Aquilegia coerulea Aquca_026_00098 I 0.955
Ciclev10004348m.g Citrus clementina Ciclev10004348m.g I 0.955
orange1.1g003787m.g Citrus sinensis orange1.1g003787m.g I 0.955
AMTR_s00197p00030350 Amborella trichopoda AMTR_s00197p00030350 I 0.954
GLYMA13G28460 Glycine max GLYMA13G28460 I 0.952
POPTR_0010s02710 Populus trichocarpa POPTR_0010s02710 I 0.952
SapurV1A.0152s0370 Salix purpurea SapurV1A.0152s0370 I 0.952
GSMUA_Achr3G09190_001 Musa acuminata GSMUA_Achr3G09190_001 I 0.951
Si021754m.g Setaria italica Si021754m.g I 0.951
29726.m003959 Ricinus communis 29726.m003959 I 0.951
Traes_1BL_8709BB152 Triticum aestivum Traes_1BL_8709BB152 I 0.950
GSMUA_Achr3G23780_001 Musa acuminata GSMUA_Achr3G23780_001 I 0.949
mgf004695m Mimulus guttatus mgf004695m I 0.949
GRMZM2G109354 Zea mays GRMZM2G109354 I 0.947
LPERR05G12780 Leersia perrieri LPERR05G12780 I 0.947
OB05G24080 Oryza brachyantha OB05G24080 I 0.947
OBART05G16150 Oryza barthii OBART05G16150 I 0.947
OGLUM05G17090 Oryza glumaepatula OGLUM05G17090 I 0.947
OLONG_015968 Oryza longistaminata OLONG_015968 I 0.947
ONIVA05G16770 Oryza nivara ONIVA05G16770 I 0.947
ORUFI05G17320 Oryza rufipogon ORUFI05G17320 I 0.947
SPL9 Oryza sativa OS05G0408200 I 0.947
PRUPE_ppa001613mg Prunus persica PRUPE_ppa001613mg I 0.947
Sb09g020110 Sorghum bicolor Sb09g020110 I 0.947
Pm008092 Prunus mume Pm008092 I 0.947
Lus10012782.g Linum usitatissimum Lus10012782.g I 0.947
Lus10033993.g Linum usitatissimum Lus10033993.g I 0.947
Pavir.J00965 Panicum virgatum Pavir.J00965 I 0.947
SELMODRAFT_49859 Selaginella moellendorffii SELMODRAFT_49859 I 0.946
Eucgr.B01228 Eucalyptus grandis Eucgr.B01228 I 0.946
Pavir.J03653 Panicum virgatum Pavir.J03653 I 0.946
OPUNC05G14270 Oryza punctata OPUNC05G14270 I 0.945
Gorai.005G056500 Gossypium raimondii Gorai.005G056500 I 0.945
MDP0000195461 Malus domestica MDP0000195461 I 0.945
F775_04392 Aegilops tauschii F775_04392 I 0.940
MTR_2g020620 Medicago truncatula MTR_2g020620 I 0.940
TCM_021101 Theobroma cacao TCM_021101 I 0.939
POPTR_0008s20160 Populus trichocarpa POPTR_0008s20160 I 0.938
SELMODRAFT_49860 Selaginella moellendorffii SELMODRAFT_49860 I 0.934
Gorai.011G183800 Gossypium raimondii Gorai.011G183800 I 0.934
SapurV1A.0407s0040 Salix purpurea SapurV1A.0407s0040 I 0.932
PK29723.1 Cannabis sativa PK29723.1 I 0.928
GSMUA_Achr5G26880_001 Musa acuminata GSMUA_Achr5G26880_001 I 0.921
Ca_00550 Cicer arietinum Ca_00550 I 0.920
BRADI2G25580 Brachypodium distachyon BRADI2G25580 I 0.916