Bra002188 (Brassica rapa)
SBP

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF03110 (SBP) IPR004333 Bra002188 T322456_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
SPL7
M02476_2.00 		Arabidopsis thaliana
DGTACKDNN
NNHMGTACH		 PBM
Weirauch et al.(2014)
pTH7288 		0.976 0.893
SPL7
M00888_2.00 		Arabidopsis thaliana
GGRGDAAAGG
CCTTTHCYCC		 PBM
Franco-Zorrilla et al.(2014)
SPL7 		0.976 0.893
For this family, TFs with SR scores > 0.885 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Bra002188.1-P SBP 137 211

Links

Other SBP family TFs
Other Brassica rapa TFs

65 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Bo9g154530 Brassica oleracea Bo9g154530 I 0.984
Bostr.26527s0326 Boechera stricta Bostr.26527s0326 I 0.981
Cagra.0263s0012 Capsella grandiflora Cagra.0263s0012 I 0.981
Carubv10002913m.g Capsella rubella Carubv10002913m.g I 0.981
SPL7 Arabidopsis lyrata scaffold_601959.1 I 0.979
Cla022022 Citrullus lanatus Cla022022 I 0.979
Cucsa.253690 Cucumis sativus Cucsa.253690 I 0.979
Thhalv10012721m.g Eutrema salsugineum Thhalv10012721m.g I 0.979
SPL7 Vitis vinifera VIT_05s0020g02160 I 0.977
AMTR_s00197p00030350 Amborella trichopoda AMTR_s00197p00030350 I 0.976
SPL7 Arabidopsis thaliana AT5G18830 D 0.976
GSMUA_Achr9G17440_001 Musa acuminata GSMUA_Achr9G17440_001 I 0.976
PGSC0003DMG401006284 Solanum tuberosum PGSC0003DMG401006284 I 0.976
Solyc01g080670.2 Solanum lycopersicum Solyc01g080670.2 I 0.976
cassava7955.valid.m1 Manihot esculenta cassava7955.valid.m1 I 0.976
cassava7956.valid.m1 Manihot esculenta cassava7956.valid.m1 I 0.976
GLYMA13G28460 Glycine max GLYMA13G28460 I 0.974
Si021754m.g Setaria italica Si021754m.g I 0.974
GSMUA_Achr3G23780_001 Musa acuminata GSMUA_Achr3G23780_001 I 0.973
Lus10012782.g Linum usitatissimum Lus10012782.g I 0.973
Lus10033993.g Linum usitatissimum Lus10033993.g I 0.973
GRMZM2G109354 Zea mays GRMZM2G109354 I 0.972
LPERR05G12780 Leersia perrieri LPERR05G12780 I 0.972
OB05G24080 Oryza brachyantha OB05G24080 I 0.972
OBART05G16150 Oryza barthii OBART05G16150 I 0.972
OGLUM05G17090 Oryza glumaepatula OGLUM05G17090 I 0.972
OLONG_015968 Oryza longistaminata OLONG_015968 I 0.972
ONIVA05G16770 Oryza nivara ONIVA05G16770 I 0.972
ORUFI05G17320 Oryza rufipogon ORUFI05G17320 I 0.972
SPL9 Oryza sativa OS05G0408200 I 0.972
Sb09g020110 Sorghum bicolor Sb09g020110 I 0.972
Ciclev10004348m.g Citrus clementina Ciclev10004348m.g I 0.972
orange1.1g003787m.g Citrus sinensis orange1.1g003787m.g I 0.972
Pavir.J00965 Panicum virgatum Pavir.J00965 I 0.972
Eucgr.B01228 Eucalyptus grandis Eucgr.B01228 I 0.971
Pavir.J03653 Panicum virgatum Pavir.J03653 I 0.971
OPUNC05G14270 Oryza punctata OPUNC05G14270 I 0.970
Traes_1BL_8709BB152 Triticum aestivum Traes_1BL_8709BB152 I 0.970
Bo00629s160 Brassica oleracea Bo00629s160 I 0.969
Bra023695 Brassica rapa Bra023695 I 0.969
GSMUA_Achr3G09190_001 Musa acuminata GSMUA_Achr3G09190_001 I 0.969
TCM_021101 Theobroma cacao TCM_021101 I 0.969
29726.m003959 Ricinus communis 29726.m003959 I 0.969
MTR_2g020620 Medicago truncatula MTR_2g020620 I 0.968
POPTR_0008s20160 Populus trichocarpa POPTR_0008s20160 I 0.967
Gorai.011G183800 Gossypium raimondii Gorai.011G183800 I 0.966
F775_04392 Aegilops tauschii F775_04392 I 0.964
mgf004695m Mimulus guttatus mgf004695m I 0.964
PK29723.1 Cannabis sativa PK29723.1 I 0.963
Gorai.005G056500 Gossypium raimondii Gorai.005G056500 I 0.959
GSMUA_Achr5G26880_001 Musa acuminata GSMUA_Achr5G26880_001 I 0.957
Ca_00550 Cicer arietinum Ca_00550 I 0.957
MDP0000271587 Malus domestica MDP0000271587 I 0.957
gene06692-v1.0-hybrid Fragaria vesca gene06692-v1.0-hybrid I 0.956
POPTR_0010s02710 Populus trichocarpa POPTR_0010s02710 I 0.954
SapurV1A.0152s0370 Salix purpurea SapurV1A.0152s0370 I 0.954
cassava1985.valid.m1 Manihot esculenta cassava1985.valid.m1 I 0.952
BRADI2G25580 Brachypodium distachyon BRADI2G25580 I 0.947
PRUPE_ppa001613mg Prunus persica PRUPE_ppa001613mg I 0.945
Pm008092 Prunus mume Pm008092 I 0.945
MDP0000195461 Malus domestica MDP0000195461 I 0.945
Aquca_026_00098 Aquilegia coerulea Aquca_026_00098 I 0.940
SapurV1A.0407s0040 Salix purpurea SapurV1A.0407s0040 I 0.935
SELMODRAFT_49859 Selaginella moellendorffii SELMODRAFT_49859 I 0.908
SELMODRAFT_49860 Selaginella moellendorffii SELMODRAFT_49860 I 0.889