CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
Home
Tools
View cart
Bulk downloads
Database stats
Contact us
Help
Update Log
FAQ
Links
How to cite
SPL7
(
Arabidopsis thaliana
)
SBP
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF03110 (SBP)
IPR004333
AT5G18830
T322399_2.00
Ensembl (2018-Dec-8)
Link out
NCBI Gene Info:
Encodes a member of the Squamosa Binding Protein family of transcriptional regulators. SPL7 is expressed highly in roots and appears to play a role in copper homeostasis. Mutants are hypersensitive to copper deficient conditions and display a retarded growth phenotype. SPL7 binds to the promoter of the copper responsive miRNAs miR398b and miR389c.
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
SPL7
M00888_2.00
Arabidopsis thaliana
GGRGDAAAGG
CCTTTHCYCC
PBM
Franco-Zorrilla et al.(2014)
SPL7
(Direct)
(Direct)
SPL7
M02476_2.00
Arabidopsis thaliana
DGTACKDNN
NNHMGTACH
PBM
Weirauch et al.(2014)
pTH7288
(Direct)
(Direct)
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
For this family, TFs with SR scores >
0.885
will likely have a similar motif
Experimental Constructs
Motif ID
Domain
From
To
Sequence
M00888_2.00
SBP
138
212
CQVPDCEADISELKGYHKRHRVCLRCATASFVVLDGENKRYCQQCGKFHLLPDFDEGKRSCRRKLERHNNRRKRK
M02476_2.00
SBP
52
126
CQVPDCEADISELKGYHKRHRVCLRCATASFVVLDGENKRYCQQCGKFHLLPDFDEGKRSCRRKLERHNNRRKRK
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
AT5G18830.1
SBP
138
212
CQVPDCEADISELKGYHKRHRVCLRCATASFVVLDGENKRYCQQCGKFHLLPDFDEGKRSCRRKLERHNNRRKRK
AT5G18830.2
SBP
138
212
CQVPDCEADISELKGYHKRHRVCLRCATASFVVLDGENKRYCQQCGKFHLLPDFDEGKRSCRRKLERHNNRRKRK
AT5G18830.3
SBP
138
212
CQVPDCEADISELKGYHKRHRVCLRCATASFVVLDGENKRYCQQCGKFHLLPDFDEGKRSCRRKLERHNNRRKRK
Links
Other
SBP
family TFs
Other
Arabidopsis thaliana
TFs
66 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
SPL7
Arabidopsis lyrata
scaffold_601959.1
I
0.983
Thhalv10012721m.g
Eutrema salsugineum
Thhalv10012721m.g
I
0.983
Cagra.0263s0012
Capsella grandiflora
Cagra.0263s0012
I
0.980
Carubv10002913m.g
Capsella rubella
Carubv10002913m.g
I
0.980
Bostr.26527s0326
Boechera stricta
Bostr.26527s0326
I
0.980
SPL7
Vitis vinifera
VIT_05s0020g02160
I
0.979
cassava7955.valid.m1
Manihot esculenta
cassava7955.valid.m1
I
0.978
Solyc01g080670.2
Solanum lycopersicum
Solyc01g080670.2
I
0.978
PGSC0003DMG401006284
Solanum tuberosum
PGSC0003DMG401006284
I
0.978
cassava7956.valid.m1
Manihot esculenta
cassava7956.valid.m1
I
0.978
GSMUA_Achr9G17440_001
Musa acuminata
GSMUA_Achr9G17440_001
I
0.976
Bra002188
Brassica rapa
Bra002188
I
0.976
Bo9g154530
Brassica oleracea
Bo9g154530
I
0.976
GSMUA_Achr3G23780_001
Musa acuminata
GSMUA_Achr3G23780_001
I
0.975
Ciclev10004348m.g
Citrus clementina
Ciclev10004348m.g
I
0.975
orange1.1g003787m.g
Citrus sinensis
orange1.1g003787m.g
I
0.975
29726.m003959
Ricinus communis
29726.m003959
I
0.974
AMTR_s00197p00030350
Amborella trichopoda
AMTR_s00197p00030350
I
0.973
Cucsa.253690
Cucumis sativus
Cucsa.253690
I
0.973
Cla022022
Citrullus lanatus
Cla022022
I
0.973
Si021754m.g
Setaria italica
Si021754m.g
I
0.973
GSMUA_Achr3G09190_001
Musa acuminata
GSMUA_Achr3G09190_001
I
0.973
Pavir.J03653
Panicum virgatum
Pavir.J03653
I
0.972
Traes_1BL_8709BB152
Triticum aestivum
Traes_1BL_8709BB152
I
0.972
OGLUM05G17090
Oryza glumaepatula
OGLUM05G17090
I
0.971
OBART05G16150
Oryza barthii
OBART05G16150
I
0.971
OB05G24080
Oryza brachyantha
OB05G24080
I
0.971
OLONG_015968
Oryza longistaminata
OLONG_015968
I
0.971
ORUFI05G17320
Oryza rufipogon
ORUFI05G17320
I
0.971
Pavir.J00965
Panicum virgatum
Pavir.J00965
I
0.971
SPL9
Oryza sativa
OS05G0408200
I
0.971
GRMZM2G109354
Zea mays
GRMZM2G109354
I
0.971
Sb09g020110
Sorghum bicolor
Sb09g020110
I
0.971
LPERR05G12780
Leersia perrieri
LPERR05G12780
I
0.971
ONIVA05G16770
Oryza nivara
ONIVA05G16770
I
0.971
Eucgr.B01228
Eucalyptus grandis
Eucgr.B01228
I
0.970
OPUNC05G14270
Oryza punctata
OPUNC05G14270
I
0.969
POPTR_0008s20160
Populus trichocarpa
POPTR_0008s20160
I
0.969
GLYMA13G28460
Glycine max
GLYMA13G28460
I
0.968
F775_04392
Aegilops tauschii
F775_04392
I
0.967
TCM_021101
Theobroma cacao
TCM_021101
I
0.966
Lus10012782.g
Linum usitatissimum
Lus10012782.g
I
0.965
Lus10033993.g
Linum usitatissimum
Lus10033993.g
I
0.965
Bo00629s160
Brassica oleracea
Bo00629s160
I
0.962
Bra023695
Brassica rapa
Bra023695
I
0.962
mgf004695m
Mimulus guttatus
mgf004695m
I
0.962
MTR_2g020620
Medicago truncatula
MTR_2g020620
I
0.961
GSMUA_Achr5G26880_001
Musa acuminata
GSMUA_Achr5G26880_001
I
0.960
Gorai.011G183800
Gossypium raimondii
Gorai.011G183800
I
0.957
cassava1985.valid.m1
Manihot esculenta
cassava1985.valid.m1
I
0.955
BRADI2G25580
Brachypodium distachyon
BRADI2G25580
I
0.953
PK29723.1
Cannabis sativa
PK29723.1
I
0.953
SapurV1A.0152s0370
Salix purpurea
SapurV1A.0152s0370
I
0.952
POPTR_0010s02710
Populus trichocarpa
POPTR_0010s02710
I
0.952
gene06692-v1.0-hybrid
Fragaria vesca
gene06692-v1.0-hybrid
I
0.952
Gorai.005G056500
Gossypium raimondii
Gorai.005G056500
I
0.948
MDP0000271587
Malus domestica
MDP0000271587
I
0.946
Ca_00550
Cicer arietinum
Ca_00550
I
0.946
PRUPE_ppa001613mg
Prunus persica
PRUPE_ppa001613mg
I
0.942
Pm008092
Prunus mume
Pm008092
I
0.942
Aquca_026_00098
Aquilegia coerulea
Aquca_026_00098
I
0.940
SapurV1A.0407s0040
Salix purpurea
SapurV1A.0407s0040
I
0.939
MDP0000195461
Malus domestica
MDP0000195461
I
0.931
SELMODRAFT_49860
Selaginella moellendorffii
SELMODRAFT_49860
I
0.890
SELMODRAFT_49859
Selaginella moellendorffii
SELMODRAFT_49859
I
0.890