CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Carubv10003065m.g
(
Capsella rubella
)
GATA
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00320 (GATA)
IPR000679
Carubv10003065m.g
T196445_2.00
JGI:Phytozome (2018-Apr-12)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No TFs with similar DNA binding domains
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Carubv10003065m
GATA
29
64
CNDCKTTKTPMWRGGPTGPKSLCNACGIRFRKQRRS
Links
Other
GATA
family TFs
Other
Capsella rubella
TFs
6 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Bostr.29827s0125
Boechera stricta
Bostr.29827s0125
N
0.867
Bra009926
Brassica rapa
Bra009926
N
0.812
Cagra.0418s0011
Capsella grandiflora
Cagra.0418s0011
N
0.867
GATA23
Arabidopsis lyrata
Al_scaffold_0006_2616
N
0.867
GATA23
Arabidopsis thaliana
AT5G26930
N
0.822
Thhalv10005181m.g
Eutrema salsugineum
Thhalv10005181m.g
N
0.842