CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Cagra.0418s0011
(
Capsella grandiflora
)
GATA
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00320 (GATA)
IPR000679
Cagra.0418s0011
T196419_2.00
JGI:Phytozome (2018-Apr-12)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No TFs with similar DNA binding domains
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Cagra.0418s0011.1.p
GATA
29
64
CSDCKTTKTPMWRGGPTGPKSLCNACGIRFRKQRRS
Links
Other
GATA
family TFs
Other
Capsella grandiflora
TFs
6 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
GATA23
Arabidopsis lyrata
Al_scaffold_0006_2616
N
0.867
Bostr.29827s0125
Boechera stricta
Bostr.29827s0125
N
0.867
Carubv10003065m.g
Capsella rubella
Carubv10003065m.g
N
0.867
Thhalv10005181m.g
Eutrema salsugineum
Thhalv10005181m.g
N
0.842
GATA23
Arabidopsis thaliana
AT5G26930
N
0.822
Bra009926
Brassica rapa
Bra009926
N
0.812