CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Gorai.001G111600
(
Gossypium raimondii
)
GRAS
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF03514 (GRAS)
IPR005202
Gorai.001G111600
T202600_2.00
JGI:Phytozome (2018-Apr-12)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No TFs with similar DNA binding domains
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Gorai.001G111600.1
GRAS
405
780
LRTLLILCAQAVSSNDHRTAGELLKQIKENSSPLGDGTQRLAHYFANGLEARMDGSGTVMQNFYMSLASKKTTAADMLKSYKGFLSACPFKKLPIFFANKMIYYMTEKASALHIVDFGILYGFQWPVLIQHLSNRPGGPPKLRITGIELPQSGFRPTERIEATGRRLANYCKRFNVPFEYKAIAAQNWENIRIEDIKINSNEVLAVNSLFRFENLLDETAEVDCPRNAVLKLIRRMNPDIFVHSIINGSYNSPFFVTRFREALFHLSSVFDMFDNTSPRDEPGRLMFESELYGQEAVNVVACEGPARVQRPETYKQWQIRMTRAGFKPLPLNQELMTKLRHKLKAWYHKDFVIDENNHWLLQGWKGRILYASSCWV
Links
Other
GRAS
family TFs
Other
Gossypium raimondii
TFs
15 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
28650.m000190
Ricinus communis
28650.m000190
N
0.759
cassava19449.valid.m1
Manihot esculenta
cassava19449.valid.m1
N
0.745
Ciclev10027848m.g
Citrus clementina
Ciclev10027848m.g
N
0.759
evm.TU.supercontig_81.123
Carica papaya
evm.TU.supercontig_81.123
N
0.708
Gorai.003G130500
Gossypium raimondii
Gorai.003G130500
N
0.781
MDP0000247940
Malus domestica
MDP0000247940
N
0.703
orange1.1g046158m.g
Citrus sinensis
orange1.1g046158m.g
N
0.756
Pm000718
Prunus mume
Pm000718
N
0.710
Pm027957
Prunus mume
Pm027957
N
0.710
POPTR_0001s24860
Populus trichocarpa
POPTR_0001s24860
N
0.743
POPTR_0009s03800
Populus trichocarpa
POPTR_0009s03800
N
0.749
PRUPE_ppa002797mg
Prunus persica
PRUPE_ppa002797mg
N
0.709
SapurV1A.0040s0480
Salix purpurea
SapurV1A.0040s0480
N
0.738
SapurV1A.0041s0170
Salix purpurea
SapurV1A.0041s0170
N
0.738
TCM_041814
Theobroma cacao
TCM_041814
N
0.838