MESCA002030 (Megaselia scalaris)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00046 (Homeobox) IPR001356 MESCA002030 T220543_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
VSX1
M03087_2.00 		Homo sapiens
YTAATTAN
NTAATTAR		 SELEX
Jolma et al.(2013)
VSX1_1 		0.778 0.543
VSX1
M03088_2.00 		Homo sapiens
NNYAATTRRBN
NVYYAATTRNN		 SELEX
Jolma et al.(2013)
VSX1_2 		0.778 0.543
VSX1
M04941_2.00 		Homo sapiens
YYAATTRN
NYAATTRR		 SELEX
Yin et al.(2017)
VSX1_eDBD_HT-SELEX 		0.778 0.543
VSX1
M04944_2.00 		Homo sapiens
NTAATTRS
SYAATTAN		 SELEX
Yin et al.(2017)
VSX1_FL_HT-SELEX 		0.778 0.543
VSX1
M05869_2.00 		Homo sapiens
DGCTAATTAN
NTAATTAGCH		 SMiLE-seq
Isakova et al.(2017)
VSX1 		0.778 0.543
VSX1
M04942_2.00 		Homo sapiens
NTAAYGMN
NKCRTTAN		 SELEX
Yin et al.(2017)
VSX1_eDBD_Methyl-HT-SELEX_1 		0.778 0.543
VSX1
M04943_2.00 		Homo sapiens
YYAATTRN
NYAATTRR		 SELEX
Yin et al.(2017)
VSX1_eDBD_Methyl-HT-SELEX_2 		0.778 0.543
VSX1
M04945_2.00 		Homo sapiens
NTAATTRG
CYAATTAN		 SELEX
Yin et al.(2017)
VSX1_FL_Methyl-HT-SELEX_1 		0.778 0.543
VSX1
M04946_2.00 		Homo sapiens
NTAAYGAN
NTCRTTAN		 SELEX
Yin et al.(2017)
VSX1_FL_Methyl-HT-SELEX_2 		0.778 0.543
VAX1
M03168_2.00 		Homo sapiens
YTAATKAN
NTMATTAR		 SELEX
Jolma et al.(2013)
VAX1_1 		0.744 0.370
VAX1
M05182_2.00 		Homo sapiens
BTAATTRN
NYAATTAV		 SELEX
Yin et al.(2017)
VAX1_eDBD_HT-SELEX 		0.744 0.370
VAX1
M05183_2.00 		Homo sapiens
BTMATKRN
NYMATKAV		 SELEX
Yin et al.(2017)
VAX1_eDBD_Methyl-HT-SELEX 		0.744 0.370
otp
M03834_2.00 		Drosophila melanogaster
BTAATTRN
NYAATTAV		 SELEX
Nitta et al.(2015)
otp_1 		0.377 1.000
otp
M03835_2.00 		Drosophila melanogaster
YTAATTRV
BYAATTAR		 SELEX
Nitta et al.(2015)
otp_2 		0.377 1.000
otp
M06516_2.00 		Drosophila melanogaster
YTAATTA
TAATTAR		 B1H
Mathelier et al.(2014)
MA0236.1 		0.377 1.000
otp
M06309_2.00 		Drosophila melanogaster
HYTAATTA
TAATTARD		 B1H
Zhu et al.(2011)
Otp_Cell_FBgn0015524 		0.377 1.000
otp
M06310_2.00 		Drosophila melanogaster
YTAATTR
YAATTAR		 B1H
Zhu et al.(2011)
Otp_SOLEXA_FBgn0015524 		0.377 1.000
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
MESCA002030-PA Homeodomain 67 112

Links

Other Homeodomain family TFs
Other Megaselia scalaris TFs

1239 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
AtGRF9 Vitis vinifera VIT_15s0048g01740 I 0.000
AtGRF9 Arabidopsis lyrata fgenesh1_pm.C_scaffold_4002259 I 0.000
Bo4g195580 Brassica oleracea Bo4g195580 I 0.000
Bostr.25993s0227 Boechera stricta Bostr.25993s0227 I 0.000
Bra039334 Brassica rapa Bra039334 I 0.000
Cagra.0698s0014 Capsella grandiflora Cagra.0698s0014 I 0.000
Carubv10023501m.g Capsella rubella Carubv10023501m.g I 0.000
cassava28657.m1 Manihot esculenta cassava28657.m1 I 0.000
Cla021612 Citrullus lanatus Cla021612 N 0.000
Cucsa.257800 Cucumis sativus Cucsa.257800 N 0.000
GLYMA01G34650 Glycine max GLYMA01G34650 N 0.000
GLYMA03G02500 Glycine max GLYMA03G02500 N 0.000
Gorai.007G092400 Gossypium raimondii Gorai.007G092400 N 0.000
GRF9 Arabidopsis thaliana AT2G45480 D 0.000
MTR_8g035910 Medicago truncatula MTR_8g035910 N 0.000
PK07653.1 Cannabis sativa PK07653.1 I 0.000
Pm017948 Prunus mume Pm017948 N 0.000
POPTR_0014s06750 Populus trichocarpa POPTR_0014s06750 I 0.000
PRUPE_ppa021277mg Prunus persica PRUPE_ppa021277mg N 0.000
TCM_005483 Theobroma cacao TCM_005483 I 0.000
Thhalv10001460m.g Eutrema salsugineum Thhalv10001460m.g I 0.000