CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Alligator_sinensis_CCG014496.1
(
Alligator sinensis
)
Homeodomain
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00046 (Homeobox)
IPR001356
Alligator_sinensis_CCG014496.1
T225255_2.00
GigaDB (2015-Oct-22)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
NOBOX
M09135_2.00
Homo sapiens
HTAATTRVB
VBYAATTAD
Misc
Kulakovskiy et al.(2013)
NOBOX_HUMAN.H11MO.0.C
0.613
0.260
For this family, TFs with SR scores >
0.599
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Alligator_sinensis_CCG014496.1
Homeodomain
151
195
RKPRTIYSSLQLQALNQRFQQTQYLALPERAELAAQLGLTQTQLQ
Alligator_sinensis_CCG014496.1
Homeodomain
189
239
LTQTQLQALNQRFQQTQYLALPERAELAAQLGLTQTQVKIWFQNKRSKYKK
Links
Other
Homeodomain
family TFs
Other
Alligator sinensis
TFs
96 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Aan_R011917
Calypte anna
Aan_R011917
I
0.604
ACUA004306
Anopheles culicifacies
ACUA004306
I
0.632
ACUA026833
Anopheles culicifacies
ACUA026833
I
0.631
ADAC001468
Anopheles darlingi
ADAC001468
I
0.635
ADAC008104
Anopheles darlingi
ADAC008104
I
0.638
AFAF008499
Anopheles farauti
AFAF008499
I
0.648
ALUE_0000848601
Ascaris lumbricoides
ALUE_0000848601
I
0.663
ALUE_0001497801
Ascaris lumbricoides
ALUE_0001497801
I
0.665
AMAM000848
Anopheles maculatus
AMAM000848
I
0.631
ASIM_0001230001
Anisakis simplex
ASIM_0001230001
I
0.648
BGLB004491
Biomphalaria glabrata
BGLB004491
I
0.650
BGLB013824
Biomphalaria glabrata
BGLB013824
I
0.635
Cflo_02794--XP_001120105.1_APIME
Camponotus floridanus
Cflo_02794--XP_001120105.1_APIME
I
0.628
Cflo_04174--XP_001120833.1_APIME
Camponotus floridanus
Cflo_04174--XP_001120833.1_APIME
I
0.612
CGI_10016653
Crassostrea gigas
CGI_10016653
I
0.743
CLEC007171
Cimex lectularius
CLEC007171
I
0.664
Cmyd_10001740
Chelonia mydas
Cmyd_10001740
I
0.629
D917_01051
Trichinella nativa
D917_01051
I
0.742
DICVIV_02647
Dictyocaulus viviparus
DICVIV_02647
I
0.627
DLX3
Bos taurus
ENSBTAG00000017409
I
0.758
DLX4
Oryctolagus cuniculus
ENSOCUG00000022067
I
0.762
DLX4
Bos taurus
ENSBTAG00000007353
I
0.772
DLX4
Myotis lucifugus
ENSMLUG00000007268
I
0.751
drgx
Takifugu rubripes
ENSTRUG00000013446
I
0.614
ECANG7_01330
Echinococcus canadensis
ECANG7_01330
I
0.710
EFV55592
Trichinella spiralis
EFV55592
I
0.620
EFV57629
Trichinella spiralis
EFV57629
I
0.742
ENSACAG00000002147
Anolis carolinensis
ENSACAG00000002147
I
0.608
ENSAMEG00000004942
Ailuropoda melanoleuca
ENSAMEG00000004942
I
0.631
ENSBTAP00000009672-D1
Bos grunniens
ENSBTAP00000009672-D1
I
0.772
ENSCSAG00000007090
Chlorocebus sabaeus
ENSCSAG00000007090
I
0.610
ENSLACG00000001487
Latimeria chalumnae
ENSLACG00000001487
I
0.613
ENSMMUP00000027138
Macaca fascicularis
ENSMMUP00000027138
I
0.610
ENSMODG00000001675
Monodelphis domestica
ENSMODG00000001675
I
0.624
ENSMPUG00000007079
Mustela putorius furo
ENSMPUG00000007079
I
0.610
ENSNLEG00000003406
Nomascus leucogenys
ENSNLEG00000003406
I
0.610
ENSOARG00000005572
Ovis aries
ENSOARG00000005572
I
0.772
ENSP00000419457-D1
Bos grunniens
ENSP00000419457-D1
I
0.610
ENSPANG00000018829
Papio anubis
ENSPANG00000018829
I
0.610
ENSPSIG00000014030
Pelodiscus sinensis
ENSPSIG00000014030
I
0.605
ENSSTOG00000026570
Ictidomys tridecemlineatus
ENSSTOG00000026570
I
0.608
ENSTSYG00000014450
Tarsius syrichta
ENSTSYG00000014450
I
0.611
EVEC_0000357701
Enterobius vermicularis
EVEC_0000357701
I
0.641
fgenesh2_pg.scaffold_23000163
Branchiostoma floridae
fgenesh2_pg.scaffold_23000163
I
0.673
GF12207
Drosophila ananassae
FBgn0089246
I
0.651
GF13343
Drosophila ananassae
FBgn0090375
I
0.742
Gfo_R002825
Geospiza fortis
Gfo_R002825
I
0.704
GK22877
Drosophila willistoni
FBgn0224839
I
0.618
HelroG173001
Helobdella robusta
HelroG173001
I
0.640
HMEL006244
Heliconius melpomene
HMEL006244
I
0.639
HPLM_0000971301
Haemonchus placei
HPLM_0000971301
I
0.621
HPLM_0001894101
Haemonchus placei
HPLM_0001894101
I
0.624
L596_g8967
Steinernema carpocapsae
L596_g8967
I
0.605
L798_06393
Zootermopsis nevadensis
L798_06393
I
0.664
L892_g24303
Steinernema scapterisci
L892_g24303
I
0.638
LDEC008146
Leptinotarsa decemlineata
LDEC008146
I
0.620
lhx8b
Takifugu rubripes
ENSTRUG00000017607
I
0.603
MCINX007054
Melitaea cinxia
MCINX007054
I
0.603
MCINX008871
Melitaea cinxia
MCINX008871
I
0.613
MCOS_0000004601
Mesocestoides corti
MCOS_0000004601
I
0.637
meox1
Takifugu rubripes
ENSTRUG00000005193
I
0.651
Myotis_brandtii_NOBOX_10026198
Myotis brandtii
Myotis_brandtii_NOBOX_10026198
I
0.610
NEMVEDRAFT_v1g198584
Nematostella vectensis
NEMVEDRAFT_v1g198584
I
0.627
nLs.2.1.2.g05836
Litomosoides sigmodontis
nLs.2.1.2.g05836
I
0.634
NOBOX
Pan troglodytes
ENSPTRG00000019828
I
0.613
NOBOX
Canis familiaris
ENSCAFG00000003500
I
0.618
NOBOX
Callithrix jacchus
ENSCJAG00000009917
I
0.610
NOBOX
Equus caballus
ENSECAG00000003123
I
0.610
NOBOX
Felis catus
ENSFCAG00000004352
I
0.610
NOBOX
Homo sapiens
ENSG00000106410
D
0.613
NOBOX
Gorilla gorilla
ENSGGOG00000022185
I
0.610
NOBOX
Myotis lucifugus
ENSMLUG00000004209
I
0.610
NOBOX
Macaca mulatta
ENSMMUG00000020609
I
0.610
NOBOX
Oryctolagus cuniculus
ENSOCUG00000001027
I
0.627
NOBOX
Otolemur garnettii
ENSOGAG00000010413
I
0.610
nRc.2.0.1.g34428
Romanomermis culicivorax
nRc.2.0.1.g34428
I
0.636
OESDEN_01216
Oesophagostomum dentatum
OESDEN_01216
I
0.611
Ogr00034
Ophisaurus gracilis
Ogr00034
N
0.665
Ogr03859
Ophisaurus gracilis
Ogr03859
I
0.604
Ogr09065
Ophisaurus gracilis
Ogr09065
I
0.661
PEQ_0001388201
Parascaris equorum
PEQ_0001388201
I
0.604
PPAI007004
Phlebotomus papatasi
PPAI007004
I
0.654
Pvit_13361
Pogona vitticeps
Pvit_13361
I
0.608
SNAPOd2T00016706001
Oikopleura dioica
SNAPOd2T00016706001
I
0.655
SPU_004366
Strongylocentrotus purpuratus
SPU_004366
I
0.630
SSLN_0001460801
Schistocephalus solidus
SSLN_0001460801
I
0.622
T265_14002
Opisthorchis viverrini
T265_14002
I
0.606
TC000483
Tribolium castaneum
TC000483
I
0.641
TCNE_0000653501
Toxocara canis
TCNE_0000653501
I
0.617
TCNE_0001081001
Toxocara canis
TCNE_0001081001
I
0.619
TELCIR_07728
Teladorsagia circumcincta
TELCIR_07728
I
0.652
tetur02g13510
Tetranychus urticae
tetur02g13510
I
0.639
tetur14g02510
Tetranychus urticae
tetur14g02510
I
0.656
TTAC_0000027101
Hydatigera taeniaeformis
TTAC_0000027101
I
0.664
TTRE_0000072001
Trichuris trichiura
TTRE_0000072001
I
0.641
YQE_10100
Dendroctonus ponderosae
YQE_10100
I
0.665