Hsal_11877--XP_001120833.1_APIME (Harpegnathos saltator)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00046 (Homeobox) IPR001356 Hsal_11877--XP_001120833.1_APIME T226308_2.00 GigaDB (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
VSX1
M03087_2.00 		Homo sapiens
YTAATTAN
NTAATTAR		 SELEX
Jolma et al.(2013)
VSX1_1 		0.799 0.587
VSX1
M03088_2.00 		Homo sapiens
NNYAATTRRBN
NVYYAATTRNN		 SELEX
Jolma et al.(2013)
VSX1_2 		0.799 0.587
VSX1
M04941_2.00 		Homo sapiens
YYAATTRN
NYAATTRR		 SELEX
Yin et al.(2017)
VSX1_eDBD_HT-SELEX 		0.799 0.587
VSX1
M04944_2.00 		Homo sapiens
NTAATTRS
SYAATTAN		 SELEX
Yin et al.(2017)
VSX1_FL_HT-SELEX 		0.799 0.587
VSX1
M05869_2.00 		Homo sapiens
DGCTAATTAN
NTAATTAGCH		 SMiLE-seq
Isakova et al.(2017)
VSX1 		0.799 0.587
VSX1
M04942_2.00 		Homo sapiens
NTAAYGMN
NKCRTTAN		 SELEX
Yin et al.(2017)
VSX1_eDBD_Methyl-HT-SELEX_1 		0.799 0.587
VSX1
M04943_2.00 		Homo sapiens
YYAATTRN
NYAATTRR		 SELEX
Yin et al.(2017)
VSX1_eDBD_Methyl-HT-SELEX_2 		0.799 0.587
VSX1
M04945_2.00 		Homo sapiens
NTAATTRG
CYAATTAN		 SELEX
Yin et al.(2017)
VSX1_FL_Methyl-HT-SELEX_1 		0.799 0.587
VSX1
M04946_2.00 		Homo sapiens
NTAAYGAN
NTCRTTAN		 SELEX
Yin et al.(2017)
VSX1_FL_Methyl-HT-SELEX_2 		0.799 0.587
VAX1
M03168_2.00 		Homo sapiens
YTAATKAN
NTMATTAR		 SELEX
Jolma et al.(2013)
VAX1_1 		0.714 0.370
VAX1
M05182_2.00 		Homo sapiens
BTAATTRN
NYAATTAV		 SELEX
Yin et al.(2017)
VAX1_eDBD_HT-SELEX 		0.714 0.370
VAX1
M05183_2.00 		Homo sapiens
BTMATKRN
NYMATKAV		 SELEX
Yin et al.(2017)
VAX1_eDBD_Methyl-HT-SELEX 		0.714 0.370
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Hsal_11877--XP_001120833.1_APIME Homeodomain 146 191

Links

Other Homeodomain family TFs
Other Harpegnathos saltator TFs

1241 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
30174.m008910 Ricinus communis 30174.m008910 N
AtGRF9 Vitis vinifera VIT_15s0048g01740 I
AtGRF9 Arabidopsis lyrata fgenesh1_pm.C_scaffold_4002259 I
Bo4g195580 Brassica oleracea Bo4g195580 I
Bostr.25993s0227 Boechera stricta Bostr.25993s0227 I
Bra039334 Brassica rapa Bra039334 I
Cagra.0698s0014 Capsella grandiflora Cagra.0698s0014 I
Carubv10023501m.g Capsella rubella Carubv10023501m.g I
cassava28657.m1 Manihot esculenta cassava28657.m1 I
cassava36905.valid.m1 Manihot esculenta cassava36905.valid.m1 N
Ca_19588 Cicer arietinum Ca_19588 I
Cla021612 Citrullus lanatus Cla021612 N
Cucsa.257800 Cucumis sativus Cucsa.257800 N
gene19384-v1.0-hybrid Fragaria vesca gene19384-v1.0-hybrid N
GLYMA01G34650 Glycine max GLYMA01G34650 N
GLYMA03G02500 Glycine max GLYMA03G02500 N
Gorai.007G092400 Gossypium raimondii Gorai.007G092400 N
GRF9 Arabidopsis thaliana AT2G45480 D
MDP0000204597 Malus domestica MDP0000204597 N
MTR_8g035910 Medicago truncatula MTR_8g035910 N
PGSC0003DMG400012767 Solanum tuberosum PGSC0003DMG400012767 N
PK07653.1 Cannabis sativa PK07653.1 I
Pm017948 Prunus mume Pm017948 N
POPTR_0014s06750 Populus trichocarpa POPTR_0014s06750 I
PRUPE_ppa021277mg Prunus persica PRUPE_ppa021277mg N
SapurV1A.0532s0070 Salix purpurea SapurV1A.0532s0070 N
Solyc01g091540.1 Solanum lycopersicum Solyc01g091540.1 N
Thhalv10001460m.g Eutrema salsugineum Thhalv10001460m.g I