Gorai.004G229400 (Gossypium raimondii)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00046 (Homeobox) IPR001356 Gorai.004G229400 T228707_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
ATHB-9
M06898_2.00 		Arabidopsis thaliana
DWWDRTAATGATKAH
DTMATCATTAYHWWH		 Dap-seq
OMalley et al.(2016)
PHV_col_a 		0.847 0.946
ATHB-9
M02682_2.00 		Arabidopsis thaliana
HNHHGTAATGATTRCDYBS
SVRHGYAATCATTACDDND		 SELEX
Mathelier et al.(2014)
MA0573.1 		0.847 0.946
ATHB-9
M10623_2.00 		Arabidopsis thaliana
HNHHGTAATGATTRCDYBS
SVRHGYAATCATTACDDND		 Transfac
Matys et al.(2006)
P$ATHB9_01 		0.847 0.946
ATHB-15
M00864_2.00 		Arabidopsis thaliana
AATAATTACT
AGTAATTATT		 PBM
Franco-Zorrilla et al.(2014)
ICU4 		0.841 0.893
ATHB-15
M06899_2.00 		Arabidopsis thaliana
DWWDRTAATGATKAH
DTMATCATTAYHWWH		 Dap-seq
OMalley et al.(2016)
ATHB15_col_a 		0.841 0.893
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Gorai.004G229400.1 Homeodomain 24 83
Gorai.004G229400.2 Homeodomain 24 83
Gorai.004G229400.3 Homeodomain 24 83
Gorai.004G229400.4 Homeodomain 24 83

Links

Other Homeodomain family TFs
Other Gossypium raimondii TFs

334 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
AAEL011380 Aedes aegypti AAEL011380 N
AALB006743 Anopheles albimanus AALB006743 N
AARA010318 Anopheles arabiensis AARA010318 N
AATE018776 Anopheles atroparvus AATE018776 N
ACUA021022 Anopheles culicifacies ACUA021022 N
ADAC001494 Anopheles darlingi ADAC001494 N
ADIR011701 Anopheles dirus ADIR011701 N
AEPI002924 Anopheles epiroticus AEPI002924 N
AFAF003948 Anopheles farauti AFAF003948 N
AFUN010134 Anopheles funestus AFUN010134 N
AGAP000005 Anopheles gambiae AGAP000005 N
AMAM015540 Anopheles maculatus AMAM015540 N
AMEC021909 Anopheles melas AMEC021909 N
AMEM017336 Anopheles merus AMEM017336 N
AMIN005344 Anopheles minimus AMIN005344 N
ASIS000124 Anopheles sinensis ASIS000124 N
A_05510 Schistosoma haematobium A_05510 N
csin110255 Clonorchis sinensis csin110255 N
csin112095 Clonorchis sinensis csin112095 N
D915_00818 Fasciola hepatica D915_00818 N
D915_15256 Fasciola hepatica D915_15256 N
DAPPUDRAFT_232871 Daphnia pulex DAPPUDRAFT_232871 N
DILT_0000548601 Diphyllobothrium latum DILT_0000548601 N
DILT_0001497901 Diphyllobothrium latum DILT_0001497901 N
ECANG7_02036 Echinococcus canadensis ECANG7_02036 N
ECANG7_05481 Echinococcus canadensis ECANG7_05481 N
EFV53345 Trichinella spiralis EFV53345 N
EmuJ_000768300 Echinococcus multilocularis EmuJ_000768300 N
EmuJ_001049000 Echinococcus multilocularis EmuJ_001049000 N
HDID_0000237901 Hymenolepis diminuta HDID_0000237901 N
HDID_0000408601 Hymenolepis diminuta HDID_0000408601 N
HelroG87827 Helobdella robusta HelroG87827 N
HmN_000466000 Hymenolepis microstoma HmN_000466000 N
HmN_000813000 Hymenolepis microstoma HmN_000813000 N
HNAJ_0000974401 Hymenolepis nana HNAJ_0000974401 N
HNAJ_0001249801 Hymenolepis nana HNAJ_0001249801 N
ISCW017350 Ixodes scapularis ISCW017350 N
LDEC006842 Leptinotarsa decemlineata LDEC006842 N
MCOS_0000526101 Mesocestoides corti MCOS_0000526101 N
MCOS_0000726501 Mesocestoides corti MCOS_0000726501 N
PHUM006290 Pediculus humanus PHUM006290 N
PXEA_0000566701 Protopolystoma xenopodis PXEA_0000566701 N
PXEA_0002175501 Protopolystoma xenopodis PXEA_0002175501 N
SCUD_0000020101 Schistosoma curassoni SCUD_0000020101 N
SCUD_0000067701 Schistosoma curassoni SCUD_0000067701 N
Sjc_0031360 Schistosoma japonicum Sjc_0031360 N
Smp_000980 Schistosoma mansoni Smp_000980 N
Smp_103530 Schistosoma mansoni Smp_103530 N
SMRZ_0000146101 Schistosoma margrebowiei SMRZ_0000146101 N
SMRZ_0001808901 Schistosoma margrebowiei SMRZ_0001808901 N
SMTD_0001194601 Schistosoma mattheei SMTD_0001194601 N
SMU15030256 Schmidtea mediterranea SMU15030256 N
SROB_0000153901 Schistosoma rodhaini SROB_0000153901 N
SROB_0001061001 Schistosoma rodhaini SROB_0001061001 N
SSLN_0000493501 Schistocephalus solidus SSLN_0000493501 N
T265_12733 Opisthorchis viverrini T265_12733 N
T265_14643 Opisthorchis viverrini T265_14643 N
TsM_000088100 Taenia solium TsM_000088100 N
TsM_000115400 Taenia solium TsM_000115400 N
TTAC_0000194001 Hydatigera taeniaeformis TTAC_0000194001 N
TTAC_0000225801 Hydatigera taeniaeformis TTAC_0000225801 N
YQE_03203 Dendroctonus ponderosae YQE_03203 N