CGOC_0001018301 (Cylicostephanus goldi)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00046 (Homeobox) IPR001356 CGOC_0001018301 T233328_2.00 WormBase:ParaSite (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
si:dkey-43p13.5
M02082_2.00 		Danio rerio
DNWNWWNWNH
DNWNWWNWNH		 PBM
Weirauch et al.(2014)
pTH6636 		0.676 0.456
Nkx3-2
M00506_2.00 		Mus musculus
NNRAGDRNN
NNYHCTYNN		 PBM
Berger et al.(2008)
Bapx1_2343 		0.604 0.474
NKX3-2
M05012_2.00 		Homo sapiens
NNTAAGTGSN
NSCACTTANN		 SELEX
Yin et al.(2017)
NKX3-2_eDBD_HT-SELEX 		0.604 0.474
NKX3-2
M09138_2.00 		Homo sapiens
TTAAGTGBNH
DNVCACTTAA		 Misc
Kulakovskiy et al.(2013)
NKX32_HUMAN.H11MO.0.C 		0.604 0.474
Nkx3-2
M09212_2.00 		Mus musculus
TTAAGTGBNH
DNVCACTTAA		 Misc
Kulakovskiy et al.(2013)
NKX32_MOUSE.H11MO.0.B 		0.604 0.474
NKX3-2
M10663_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$NKX32_01 		0.604 0.474
NKX3-2
M05013_2.00 		Homo sapiens
NNTAAGTGBN
NVCACTTANN		 SELEX
Yin et al.(2017)
NKX3-2_eDBD_Methyl-HT-SELEX_1 		0.604 0.474
NKX3-2
M05014_2.00 		Homo sapiens
NTAACGHB
VDCGTTAN		 SELEX
Yin et al.(2017)
NKX3-2_eDBD_Methyl-HT-SELEX_2 		0.604 0.474
bap
M00560_2.00 		Drosophila melanogaster
NDAAGTRBNN
NNVYACTTHN		 PBM
Busser et al.(2012a)
Bap 		0.600 0.439
bap
M02119_2.00 		Drosophila melanogaster
NYTAAGTRSNN
NNSYACTTARN		 PBM
Weirauch et al.(2014)
pTH5945 		0.600 0.439
bap
M03812_2.00 		Drosophila melanogaster
NNTAAGTGBN
NVCACTTANN		 SELEX
Nitta et al.(2015)
bap_1 		0.600 0.439
bap
M06504_2.00 		Drosophila melanogaster
TTAAGTR
YACTTAA		 B1H
Mathelier et al.(2014)
MA0211.1 		0.600 0.439
bap
M06287_2.00 		Drosophila melanogaster
NBTTAAGTRN
NYACTTAAVN		 B1H
Zhu et al.(2011)
Bap_Cell_FBgn0004862 		0.600 0.439
bap
M06288_2.00 		Drosophila melanogaster
NYTAAKTR
YAMTTARN		 B1H
Zhu et al.(2011)
Bap_SOLEXA_FBgn0004862 		0.600 0.439
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
CGOC_0001018301-mRNA-1 Homeodomain 30 87

Links

Other Homeodomain family TFs
Other Cylicostephanus goldi TFs

115 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
AALB000327 Anopheles albimanus AALB000327 I
AARA005138 Anopheles arabiensis AARA005138 I
ACEP26487 Atta cephalotes ACEP26487 I
ACHR004287 Anopheles christyi ACHR004287 I
ADIR006768 Anopheles dirus ADIR006768 I
AEPI004828 Anopheles epiroticus AEPI004828 I
AFUN001295 Anopheles funestus AFUN001295 I
AMAM009154 Anopheles maculatus AMAM009154 I
AMEC016887 Anopheles melas AMEC016887 I
AMIN006279 Anopheles minimus AMIN006279 I
ANCDUO_09759 Ancylostoma duodenale ANCDUO_09759 I
AQUA000678 Anopheles quadriannulatus AQUA000678 I
BGLB001705 Biomphalaria glabrata BGLB001705 I
BGLB005976 Biomphalaria glabrata BGLB005976 I
CGOC_0000387301 Cylicostephanus goldi CGOC_0000387301 I
Crx Mus musculus ENSMUSG00000041578 D
D918_03762 Trichuris suis D918_03762 N
EFV59137 Trichinella spiralis EFV59137 N
ENSCING00000013809 Ciona intestinalis ENSCING00000013809 I
ENSLACG00000003225 Latimeria chalumnae ENSLACG00000003225 N
ENSMEUG00000002781 Macropus eugenii ENSMEUG00000002781 I
ENSMICG00000004221 Microcebus murinus ENSMICG00000004221 I
e_gw.814.10.1 Branchiostoma floridae e_gw.814.10.1 I
GB40331 Apis mellifera GB40331 I
GB42226 Apis mellifera GB42226 I
genemark-nMf.1.1.scaf05885-processed-gene-0.2 Meloidogyne floridensis genemark-nMf.1.1.scaf05885-processed-gene-0.2 I
Hmbox1 Dipodomys ordii ENSDORG00000015971 N
HMBOX1 Sorex araneus ENSSARG00000009365 N
HMBOX1 Ochotona princeps ENSOPRG00000013613 N
Hmbox1 Mus musculus ENSMUSG00000021972 D
HMBOX1 Homo sapiens ENSG00000147421 D
Hnf1a Mus musculus ENSMUSG00000029556 D
HNF1A Homo sapiens ENSG00000135100 D
ISCW005275 Ixodes scapularis ISCW005275 I
ISCW017713 Ixodes scapularis ISCW017713 I
L893_g29073 Steinernema glaseri L893_g29073 I
LDEC010767 Leptinotarsa decemlineata LDEC010767 I
maker-nMf.1.1.scaf05852-augustus-gene-0.4 Meloidogyne floridensis maker-nMf.1.1.scaf05852-augustus-gene-0.4 I
MESCA003695 Megaselia scalaris MESCA003695 I
MhA1_Contig1070.frz3.gene23 Meloidogyne hapla MhA1_Contig1070.frz3.gene23 I
Ogr07758 Ophisaurus gracilis Ogr07758 N
PXEA_0000709901 Protopolystoma xenopodis PXEA_0000709901 I
SINV23302 Solenopsis invicta SINV23302 I
SPU_008196 Strongylocentrotus purpuratus SPU_008196 N
SROB_0000568701 Schistosoma rodhaini SROB_0000568701 I
SVUK_0000982701 Strongylus vulgaris SVUK_0000982701 I
TTRE_0000607501 Trichuris trichiura TTRE_0000607501 N