CIS-BP Database: Catalog of Inferred Sequence Binding Preferences

TF Information

ATHSFA2 *(Arabidopsis lyrata)* HSF
Pfam ID	Interpro ID	Gene ID	CIS-BP ID	Sequence source	Animal TF db
PF00447 (HSF_DNA-bind)	IPR000232	fgenesh2_kg.4__531__AT2G26150.1	T240575_2.00	Ensembl (2018-Dec-8)	Link out
Directly determined binding motifs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
No direct experiments
Motifs from related TFs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
HSFA6B M06941_2.00	Arabidopsis thaliana	RGAASNTTCTAGA	TCTAGAANSTTCY	Dap-seq OMalley et al.(2016) HSFA6B_colamp_a	0.452	0.782
HSFA6B M06942_2.00	Arabidopsis thaliana	RGAABNTTCTRGAAN	NTTCYAGAANVTTCY	Dap-seq OMalley et al.(2016) HSFA6B_col	0.452	0.782
HSFA4A M06947_2.00	Arabidopsis thaliana	NNNRGAABBTTCTAGAANN	NNTTCTAGAAVVTTCYNNN	Dap-seq OMalley et al.(2016) HSF21_col_a	0.444	0.701
HSFA1E M06939_2.00	Arabidopsis thaliana	RGAANNTTCTAGA	TCTAGAANNTTCY	Dap-seq OMalley et al.(2016) HSFA1E_col_a	0.434	0.736
HSFA1E M06940_2.00	Arabidopsis thaliana	RGAASNTTCTAGAAN	NTTCTAGAANSTTCY	Dap-seq OMalley et al.(2016) HSFA1E_colamp_a	0.434	0.736
HSFA1B M06948_2.00	Arabidopsis thaliana	GAANNTTCTAGA	TCTAGAANNTTC	Dap-seq OMalley et al.(2016) HSF3_col_a	0.426	0.747
HSFA1B M06949_2.00	Arabidopsis thaliana	TTCYRG	CYRGAA	Dap-seq OMalley et al.(2016) HSF3_colamp_a	0.426	0.747
HSFA6A M06950_2.00	Arabidopsis thaliana	GAASNTTCTAGAANNW	WNNTTCTAGAANSTTC	Dap-seq OMalley et al.(2016) HSFA6A_col_a	0.407	0.690
HSFA6A M06951_2.00	Arabidopsis thaliana	GAASNTTCTAGAA	TTCTAGAANSTTC	Dap-seq OMalley et al.(2016) HSFA6A_colamp_a	0.407	0.690
HSFB4 M06936_2.00	Arabidopsis thaliana	RGAASNTTCTAGAAN	NTTCTAGAANSTTCY	Dap-seq OMalley et al.(2016) HSFB4_col_a	0.404	0.678
HSFC1 M00868_2.00	Arabidopsis thaliana	NDTCBNNN	NNNVGAHN	PBM Franco-Zorrilla et al.(2014) HSFC1	0.382	0.678
HSFC1 M06943_2.00	Arabidopsis thaliana	GAASNTTCTAG	CTAGAANSTTC	Dap-seq OMalley et al.(2016) HSFC1_col_a	0.382	0.678
HSFC1 M06944_2.00	Arabidopsis thaliana	RGAASNTTCTAGAANVW	WBNTTCTAGAANSTTCY	Dap-seq OMalley et al.(2016) HSFC1_colamp_a	0.382	0.678
HSFB2B M06945_2.00	Arabidopsis thaliana	RGAANNTTCTAGAA	TTCTAGAANNTTCY	Dap-seq OMalley et al.(2016) HSF7_col_a	0.366	0.609
HSFB2B M06946_2.00	Arabidopsis thaliana	RGAANNTTCTAGAA	TTCTAGAANNTTCY	Dap-seq OMalley et al.(2016) HSF7_colamp_a	0.366	0.609
HSFB2A M00869_2.00	Arabidopsis thaliana	NNNNNTTCB	VGAANNNNN	PBM Franco-Zorrilla et al.(2014) HSFB2A	0.364	0.598
HSFB2A M06952_2.00	Arabidopsis thaliana	GAANNTTCYAGA	TCTRGAANNTTC	Dap-seq OMalley et al.(2016) HSF6_col_a	0.364	0.598
HSFB3 M06937_2.00	Arabidopsis thaliana	RRAANMWTCTAGAAV	BTTCTAGAWKNTTYY	Dap-seq OMalley et al.(2016) HSFB3_col_a	0.357	0.598
HSFB3 M06938_2.00	Arabidopsis thaliana	AABSTTCTAGAAN	NTTCTAGAASVTT	Dap-seq OMalley et al.(2016) HSFB3_colamp_a	0.357	0.598
For this family, TFs with SR scores > 0.318* will likely have a similar motif*

DNA Binding Domains

Protein ID	Domain	From	To	Sequence
fgenesh2_kg.4__531__AT2G26150.1	HSF	45	135	FLTKTYEMVEDPATDTVVSWSNGRNSFVVWDSHKFSTTLLPRYFKHSNFSSFIRQLNTYGFRKIDPDRWEFANEGFLAGQKHLLKNIKRRR

Links
Other HSF family TFs
Other *Arabidopsis lyrata* TFs

1415 Related TFs

Name	Species	Gene ID	Motif Evidence	SR Score	Action
29693.m002041	Ricinus communis	29693.m002041	N	0.000
29693.m002042	Ricinus communis	29693.m002042	N	0.000
cassava9834.m1	Manihot esculenta	cassava9834.m1	N	0.000
Ciclev10006503m.g	Citrus clementina	Ciclev10006503m.g	N	0.000
Ciclev10006708m.g	Citrus clementina	Ciclev10006708m.g	N	0.000
Ciclev10006958m.g	Citrus clementina	Ciclev10006958m.g	N	0.000
Ciclev10007010m.g	Citrus clementina	Ciclev10007010m.g	N	0.000
Ciclev10007104m.g	Citrus clementina	Ciclev10007104m.g	N	0.000
Cla009921	Citrullus lanatus	Cla009921	N	0.000
Cucsa.047600	Cucumis sativus	Cucsa.047600	N	0.000
Eucgr.E02824	Eucalyptus grandis	Eucgr.E02824	N	0.000
Eucgr.E02829	Eucalyptus grandis	Eucgr.E02829	N	0.000
Eucgr.E02870	Eucalyptus grandis	Eucgr.E02870	N	0.000
Eucgr.E02872	Eucalyptus grandis	Eucgr.E02872	N	0.000
Eucgr.L01236	Eucalyptus grandis	Eucgr.L01236	N	0.000
orange1.1g038327m.g	Citrus sinensis	orange1.1g038327m.g	N	0.000
Pm008734	Prunus mume	Pm008734	N	0.000
POPTR_0004s13590	Populus trichocarpa	POPTR_0004s13590	N	0.000
PRUPE_ppa024983mg	Prunus persica	PRUPE_ppa024983mg	N	0.000

ATHSFA2 (Arabidopsis lyrata) HSF

TF Information

Directly determined binding motifs

Motifs from related TFs

DNA Binding Domains

Links

1415 Related TFs

ATHSFA2 **(Arabidopsis lyrata)
HSF**